Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00554 ATGGCATTGTCTTCTTCTCCGGCAAGACCTCCAATTATCCCTCTCTTCTCACTCCTTTTTCTCCTTTTTCTCTTCCGCATCTCGTCTGTCTTCGCGGGCGATGTCTCACTCGATGACGACTCCGCTCCTAAGTCCGGAAATTGCAACAATCCCTTTGATTTGGTCAAAGTTAAGAGCTGGGTTAATGATGCTGAAGATAAAATCTTTGTTGGTCTAAGTGCAAGATTTGGGGCTTTGGTGCCTTCTCAGGCTGAAAATTCTCCCAAATTGCCAGTTGTTGATATGAATCCTATAAATGGATGTTCTAGGTCTTCTTCAAAGCTATCTGGAGCAATTGCCTTGTCTATACGTGGTGAATGCGACTTCACAAATAAGGCAGTAGTTGCACAGGCAGGGGGCGCTGCAGCCCTGTTGATAATAAATGACAAAGAAGATCTTTACAAGATGGTCTGCTCTGAAAAAGACACCGCTATCAATATTTCAATTCCTGTTGTGATGCTTCCCAAGTCCAGTGGAGATGCTCTTACCAAATTAATAACTGACGGAAAGAGAGTGGAACTTCTATTATATGCGCCAAAGCGTCCAATTGTGGACCTCTCTGTTGTGTTTTTGTGGATGATGGCTGTTGGAACAGTTGCATGTGCTGCACTTTGGCCTGAGATCACTGCCGAGCAGACTGAGGAGCGCTATAATGAATTATCAGCAAAGGAATCTTCCAGTCGTGAAGCAGCCAAAGATGACTTTGATGATGAAACACTCGATATTAATGCAAAGAGTGCAGTAGTATTTGTCATTACAGCATCTAGTTTCTTGGTGCTGCTATATTTCTTTATGTCTTCTTGGTTCGTTTGGCTGTTGATTGTTATGTTTTGCATTGGTGGTGTTGAGGGTATGCATTCCTGTATATTAGGACTGATATTAAGAAAAGGCAAAAGTTGTGGGCAGAAGACTCTGAATTTGCCTTTAGTAGGGAAGATCTCTGTGCTTTCACTTGTTGTGCTGCTTTGTTCCATAACTTTTGCAGTCGTTTGGGCTCTGAATCGGCGTGCATCATATTCTTGGGTTGGTCAAAATGTTCTTGGTATTTGCCTGATGATAACAGTCCTGCAGATGGCCCGATTACCTAATATTAAGGTAGCAACAGTGCTTCTTTGCTGTGCATTTGTCTATGACATCTTCTGGGTGTTCATATCACCAGTAATTTTTCACGAGAGTGTAATGATTGCGGTTGCCCGAGGGGACAATAGTGGTGGAGAATCCATTCCAATGCTTTTAAGGGTTCCTCGCACCTTTGATCCTTGGGGTGGTTTCGATATGATTGGATTTGGGGATATACTCTTCCCTGGGTTGCTTGTTTCGTTTACTCACAGATTTGACAAAGCACTCAACAAAAGCAGGTGTAATGCATATTTTCCTTGGTTGGTTGTTGGTTACGGAACTGGGTTGAAGAGGATAGGGAGTGGTCGTTTGTGCACTAGGTCTGGTGTTAACGTATTTGGGGTTATATTTTATGAATGGACATGGTCAACCTGCACTCCTTTATCTTGTTCCATGCACCTTAGGTGTTACTGTTGTTTTGGGTTTTATGAGAGGGGAGATTAA 1602 42.88 MALSSSPARPPIIPLFSLLFLLFLFRISSVFAGDVSLDDDSAPKSGNCNNPFDLVKVKSWVNDAEDKIFVGLSARFGALVPSQAENSPKLPVVDMNPINGCSRSSSKLSGAIALSIRGECDFTNKAVVAQAGGAAALLIINDKEDLYKMVCSEKDTAINISIPVVMLPKSSGDALTKLITDGKRVELLLYAPKRPIVDLSVVFLWMMAVGTVACAALWPEITAEQTEERYNELSAKESSSREAAKDDFDDETLDINAKSAVVFVITASSFLVLLYFFMSSWFVWLLIVMFCIGGVEGMHSCILGLILRKGKSCGQKTLNLPLVGKISVLSLVVLLCSITFAVVWALNRRASYSWVGQNVLGICLMITVLQMARLPNIKVATVLLCCAFVYDIFWVFISPVIFHESVMIAVARGDNSGGESIPMLLRVPRTFDPWGGFDMIGFGDILFPGLLVSFTHRFDKALNKSRCNAYFPWLVVGYGTGLKRIGSGRLCTRSGVNVFGVIFYEWTWSTCTPLSCSMHLRCYCCFGFYERGD 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5643411 5673739 + CmoCh17G005540.1 Cmo17g00554 400937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00554 533 SMART psh_8 251 499 IPR006639 GO:0004190|GO:0016021
Cmo17g00554 533 PANTHER SIGNAL PEPTIDE PEPTIDASE 43 482 IPR007369 GO:0004190|GO:0016021
Cmo17g00554 533 Gene3D - 56 192 - -
Cmo17g00554 533 Pfam Signal peptide peptidase 250 482 IPR007369 GO:0004190|GO:0016021
Cmo17g00554 533 SUPERFAMILY PA domain 84 160 IPR046450 -
Cmo17g00554 533 Coils Coil 223 243 - -
Cmo17g00554 533 Pfam PA domain 91 175 IPR003137 -
Cmo17g00554 533 PANTHER SIGNAL PEPTIDE PEPTIDASE-LIKE PROTEIN 43 482 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00554 K09597 SPPL2B; signal peptide peptidase-like 2B [EC:3.4.23.-] - csv:101207965 807.364
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00877 Cmo17g00554 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00877 Cmo-Chr8:5663352 Cmo17g00554 Cmo-Chr17:5643411 8.20E-142 dispersed
Cmo15g01297 Cmo-Chr15:8901972 Cmo17g00554 Cmo-Chr17:5643411 6.73E-134 dispersed
Cmo17g00554 Cmo-Chr17:5643411 Cmo16g00127 Cmo-Chr16:572977 3.37E-15 dispersed
Cmo08g00104 Cmo-Chr8:549449 Cmo17g00554 Cmo-Chr17:5643411 2.40E-71 transposed
Cmo17g00554 Cmo-Chr17:5643411 Cmo08g00103 Cmo-Chr8:541255 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003023 1 2 2 2 0 2 2 2 2 1 2 1 2 1 1 3 2 1 2 2 1 1 1 1 1 3 1 3 4 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00554 Cmo_Chr17 FPKM 1.685128 0.485026 0.094561 0.0 6.624993 5.895818 6.946284 0.0 0.0 0.0