Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00570 ATGAGCAGAAGGGGGCTCAAATCCCTCCACTTTCTCTCACTCTCCTTAATTTCATCCCCAATTAGATCCAACCCCATCTTCTCCTTTCACCCATTTCCGGTGTACTCCGATTCTTTCAGAGCTGCCCTCCCTAACATCACTCTATATCGCCCAACGCCTTCCTCCTCCATTGCCCACTTCTCCACTTCTCCGGACGATCTCCAAGGATTGGTTGATCCGGACGAGTCGCTTCCGTCTGAGGGTTCGCGTGCCGAATGCTTTTCGGCCCCAGAAGTCTCTTTGCTGCGTGGTTCGTTATTGGATTCTCATGCCGACTCGCCTTCTTCAGAGCCGACGCTCAAGTCTGGTAAGATTTCAAACGATGCCATTTCGATTTTAGATACAATTCGTAATAGTGATGATGGGTTCGGGGACAAAACCCAAAAATTACTTAGGCAGTTTAGGCAGAATTTGAATCCGGATTTGGTGGTTGAGATTTTGGGTCTTTTGAGAAATCCTGAATTGTGTGTCAAATTCTTTTTATGGGCTGGTCGACAAATTGGTTACAATCATACTGCGTCAGTGTACAATGCGTTGTTAGATGTTTATGAATGTGGTAGCTATGATCGAGTACCCGAGCAGTTTCTTCGAGAAATTAAGGATGATGACAAAGAGGTGCTTGGGAAGTTGCTTAATGTGTTGATTAGGAAGTGTTGTCGGAATGGGTTTTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTTGGATACAAGCCTACCCGGTTAACTTATAATGCTTTAATTCAAGTCTTTCTTAGAGCAGATAAGTTGGACACTGCTTATTTGGTTCATAGAGAAATGTCAGAGTTAGGATTCAATATGGATGAGTTTACTCTTGGTCGTTTTGCTCAAGCTCTCTGCAAAGTGGGCAAATGGAGAGAGGCCCTCTCGTTAATTGAGAAAGAAGATTTTGTCCCTAATACGATTCTTTATACGAAGATGATATCTGGACTGTGCAACGCTTCGTTTTTTGAAGAAGCTATGGATTTTTTGAACAGGATGCGGTCGAGTTCTTGCATCCCTAATGCTCAGACTTATAAGATCTTGCTTTGTGGCTGTTTGAATAAAAAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTCCCGAGTTATACGATATTTAATTCTCTTGTTCATGCTTATTGCAAATCAGGCGATTTTTCGTATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTCATTGGCGGTATTTGTAACGGTAAAGAATTACCTGGGCCAATTACATTTGAGTTGGCTGAGAAAGCGTACAACGAGATGTGTTCTTCCGGAACTGTTCTAAATAAGGTCAATGTTGTAAGCTTTGCTCGATGCCTTTGCGGCTTTGGGAAATTCGAGGAAGCGTATAAAGTAATCCATGAAATGATGGGTAATGGTTTCATTCCTGATAGATCTACATATTCTGAAGTGATAGGTTTTATGTGTAATGCCTCAAGGGTAGAAAATGCCTTTTTGCTTTTTAAAGAAATGAAAGGGGCTGGTATGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCGAAAGCTGGCCTCATTCAACAAGCTCACAATTGGCTAGACGAAATGGTAAGGGATGGCTGTGAACCTACTGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAGGTTTCGGTCGCTAATGAACTTTTTGAGGTAATGATAGCCAAGGGTTGTATTCCTAATGTTATTACATATACAGCTTTAATTGATGGATATTGTAAATCAGGGAATATAGAAAAAGCTTGCCAGATTTATGCAAGAATGAGAGGAGATGCAGACATTCCCGATGTCGATATGTATTTTAAAACAGAAAATAACGTGTCTGAAAAGCCTAATGTTGTTACATATGGAGCTTTGGTGGATGGTTTATGCAAGGCCCATAAAGTCAAAGATGCATGTGACTTATTGGAAACGATGTTTTTGGAAGGCTGTGAACCAAACAACATTGTATATGATGCACTTATTGATGGCTTTTGTAAGGCTGCAAAGTTAGATGAAGCACAAGAGGTGTTTGTTAAGATGGTAGAGCGTGGGTATAACCCTAACGTCTATACGTATAGCTCTCTTATCGATAGATTGTTCAAGGATAAGCGTCTAGATCTTGTATTGAAAGTGTTGTCCAAAATGTTAGAGAATTCTTGTGCTCCTAATGTTGTTATCTACACAGAGATGATTGATGGACTTTGTAAAGTGGCAAAGACAGATGAAGCTTATAAACTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTTGACAAATGCCTCGAGCTTTTCAGGGAAATGGGCTCGAAAGGCTGTTCTCCGAATTTTGTCACCTACACGGTGTTGATCAACCATTGCTGTGCTTCTGGCCGTTTAGATGAGGCCTATGCACTTTTGGATGAAATGAAACAAACATACTGGCCAAAACATGTATCGAGCTACTGTAAGGTTGTTGAAGGCTATAACCGGGAGTTCATTCTCTCTCTCGGGCTTTTAGAGGAAGTGGAAAAGAATGATGCTACCCCAATTATTCTGCTGTACAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAAGTGGCACTGGAGCTCCACAAAGAGGTTATATCAGCTTCAATGTCTATGGCTGCTAAGAAAAATATGTACACAACTTTGATTTACAGCTTTTCTACGGCAATGAAGATTGATCAGGCGTTCGAGTTATATAATGATATGATAAGACAGGGTGTTATTCCAGATCTTGGTACATTTGTCGACCTTATTATGGGGCTCGTCAAAGTTAGAAGGTGGGAAGAAGCACTCCAGTTGTCAGATAGCATATGTCAAATGGATATCAACTGGTTGCAACGGGAAGACGCATCTTGA 3048 40.78 MSRRGLKSLHFLSLSLISSPIRSNPIFSFHPFPVYSDSFRAALPNITLYRPTPSSSIAHFSTSPDDLQGLVDPDESLPSEGSRAECFSAPEVSLLRGSLLDSHADSPSSEPTLKSGKISNDAISILDTIRNSDDGFGDKTQKLLRQFRQNLNPDLVVEILGLLRNPELCVKFFLWAGRQIGYNHTASVYNALLDVYECGSYDRVPEQFLREIKDDDKEVLGKLLNVLIRKCCRNGFWNVALEELGRLKDFGYKPTRLTYNALIQVFLRADKLDTAYLVHREMSELGFNMDEFTLGRFAQALCKVGKWREALSLIEKEDFVPNTILYTKMISGLCNASFFEEAMDFLNRMRSSSCIPNAQTYKILLCGCLNKKQLGRCKRILSMMIAEGCFPSYTIFNSLVHAYCKSGDFSYAYKLLKKMEKCECKPGYVVYNIFIGGICNGKELPGPITFELAEKAYNEMCSSGTVLNKVNVVSFARCLCGFGKFEEAYKVIHEMMGNGFIPDRSTYSEVIGFMCNASRVENAFLLFKEMKGAGMVPDVYTYTILIDCFSKAGLIQQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFEVMIAKGCIPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKTENNVSEKPNVVTYGALVDGLCKAHKVKDACDLLETMFLEGCEPNNIVYDALIDGFCKAAKLDEAQEVFVKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNVVIYTEMIDGLCKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCSPNFVTYTVLINHCCASGRLDEAYALLDEMKQTYWPKHVSSYCKVVEGYNREFILSLGLLEEVEKNDATPIILLYRVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNMYTTLIYSFSTAMKIDQAFELYNDMIRQGVIPDLGTFVDLIMGLVKVRRWEEALQLSDSICQMDINWLQREDAS 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5853506 5856705 + CmoCh17G005700.1 Cmo17g00570 400953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 884 1015 IPR011990 GO:0005515
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 744 883 IPR011990 GO:0005515
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 316 443 IPR011990 GO:0005515
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 608 642 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 939 973 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 764 798 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 693 741 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 572 621 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 798 846 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 506 551 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 393 440 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat family 321 368 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 503 537 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Cmo17g00570 1015 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 109 1010 - -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 573 607 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 395 426 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 506 539 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 731 765 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 836 862 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 610 636 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 477 503 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 801 834 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 697 730 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 766 800 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 942 974 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 360 392 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 258 290 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 325 358 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 540 574 IPR002885 -
Cmo17g00570 1015 TIGRFAM PPR: pentatricopeptide repeat domain 575 609 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat 942 971 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat 477 500 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat 906 931 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 694 728 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat 657 686 IPR002885 -
Cmo17g00570 1015 Pfam PPR repeat 760 791 IPR002885 -
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 450 652 IPR011990 GO:0005515
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 158 315 IPR011990 GO:0005515
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 799 833 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 538 572 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Cmo17g00570 1015 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 834 868 IPR002885 -
Cmo17g00570 1015 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 109 1010 - -
Cmo17g00570 1015 Pfam Pentatricopeptide repeat domain 209 266 IPR002885 -
Cmo17g00570 1015 Gene3D Tetratricopeptide repeat domain 653 743 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00570 - - - mcha:111018584 1753.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02349 Cmo-Chr4:17450873 Cmo17g00570 Cmo-Chr17:5853506 1.19E-16 dispersed
Cmo13g00271 Cmo-Chr13:2211580 Cmo17g00570 Cmo-Chr17:5853506 4.97E-06 dispersed
Cmo15g00069 Cmo-Chr15:376898 Cmo17g00570 Cmo-Chr17:5853506 1.55E-09 dispersed
Cmo17g00570 Cmo-Chr17:5853506 Cmo11g01832 Cmo-Chr11:12801551 9.34E-49 dispersed
Cmo19g00844 Cmo-Chr19:8217615 Cmo17g00570 Cmo-Chr17:5853506 1.41E-06 dispersed
Cmo17g00570 Cmo-Chr17:5853506 Cmo04g00287 Cmo-Chr4:1444475 1.17E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1146 . . . . . . . . . Cmo17g00570 . . . . . . . . . . . . . . Cla08g00440 Cam08g0873 Cec08g0452 Cco08g0574 Clacu08g0589 . Cre08g0412 . . . . . . . . . . . . . . . . . . . . Cma17g00588 . Car17g00544 Cpe12g00501 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009746 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00570 Cmo_Chr17 FPKM 32.602543 32.509224 43.299599 41.181046 24.560966 25.900229 28.823387 40.264702 38.856354 50.504353