Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00573 ATGAAGAACGGAATGATAGAATGCTGTGTTTGTCACTCCCCGTTGGTTTCTCCGACTAACAAAGGTATATCGAGGGCATATGATCAACATAAGATCAGAATATCATCTAAGCAACGAGCCTTAAACACCCTCTTGGTTGTAGGTGATTGTATCTTGGTTGGTATGCAGCCTATTTTGGTTTATATGTCCAAGGTGGATGGGAAATTCATGTTCAGTCCAATTAGTGTTAACTTTTTGACCGAGACTACAAAGGTTATCTTTGCTATTTTTATGCTGATAATCCAGGCTAGACATCAGAAAGTTGGGGAAAAGCCTCTTCTCTCAATATCAACATTTATGCAGGCAGCACGTAACAATGTGCTTCTCGCTGTGCCAGCACTTCTCTATGCAATCAATAATTACCTGAAGTTTATCATGCAGCTATCTTTCAACCCTGCAACTGTGAAGATGCTTAGCAATTTAAAGGTTTTGGTGATTGCTGTCTTGCTAAAGTTGATTATGAGACGACATTTTTCTATTATTCAGTGGGAAGCACTTGCTCTGCTGCTTATTGGCATAAGTGTAAATCAGTTGCGGTCCATGCCTGATACCTCCACTTTGGGTCTCACAGTTACCATGAGCACATATGTCTACACACTGATTTTTGTAACTGTTCCATCTCTAGCTTCTGTTTATAACGAATATGCTTTGAAGAGCCAGTATGATACTAGCATCTATCTTCAGAATTTGTTTTTATATGGATATGGCGCGATATTCAACTTCATGGGAATATTAGGAACAGTTCTTATGAAAGGTCCTAGCAGCTTTGATATACTCCAAGGTCATTCTAAAGCCACAATGCTGCTTATAGCTAATAATGCAGCACAAGGAATTCTATCCTCTTTCTTCTTCAAATATGCAGATACAATTCTGAAGAAGTACTCCTCAACAGTTGCTACCATATTTACAGGCATAGCGTCGGCCATCTTGTTTGGTCATCAGTTGACTATGAACTTTGTCTTGGGAATATCTATAGTGTTCATCTCTATGCACCAGTTCTTCTCACCCCTCTCAAAAGTCAAAGACGAGCAGAATGGGGTTACTGAAATGGTGGATGTGGATAACCAGAGGTCAAAGGGTTCCTTCGTAAATATGGCAGCAGGAGCAAATGAAGAGGTGGGGATTTGGCTCGTCTTCTGA 1179 40.2 MKNGMIECCVCHSPLVSPTNKGISRAYDQHKIRISSKQRALNTLLVVGDCILVGMQPILVYMSKVDGKFMFSPISVNFLTETTKVIFAIFMLIIQARHQKVGEKPLLSISTFMQAARNNVLLAVPALLYAINNYLKFIMQLSFNPATVKMLSNLKVLVIAVLLKLIMRRHFSIIQWEALALLLIGISVNQLRSMPDTSTLGLTVTMSTYVYTLIFVTVPSLASVYNEYALKSQYDTSIYLQNLFLYGYGAIFNFMGILGTVLMKGPSSFDILQGHSKATMLLIANNAAQGILSSFFFKYADTILKKYSSTVATIFTGIASAILFGHQLTMNFVLGISIVFISMHQFFSPLSKVKDEQNGVTEMVDVDNQRSKGSFVNMAAGANEEVGIWLVF 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5880772 5893332 - CmoCh17G005730.1 Cmo17g00573 400956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00573 392 PANTHER - 3 388 - -
Cmo17g00573 392 TIGRFAM nst: UDP-galactose transporter 122 343 - -
Cmo17g00573 392 PIRSF UDP-gal_transpt 20 386 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cmo17g00573 392 PANTHER NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER 3 388 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cmo17g00573 392 Pfam Nucleotide-sugar transporter 59 343 IPR007271 GO:0000139|GO:0015165|GO:0016021|GO:0090481
Cmo17g00573 392 SUPERFAMILY Multidrug resistance efflux transporter EmrE 114 194 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00573 - - - csv:101221623 679.863
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00084 Cmo17g00573 CST
Cmo08g00111 Cmo17g00573 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00111 Cmo-Chr8:573540 Cmo17g00573 Cmo-Chr17:5880772 9.94E-39 dispersed
Cmo02g00297 Cmo-Chr2:1489024 Cmo17g00573 Cmo-Chr17:5880772 9.76E-37 transposed
Cmo17g00573 Cmo-Chr17:5880772 Cmo08g00084 Cmo-Chr8:430438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1154 Blo01g00234 . . Bda08g00117 . . . . Cmo08g00084 Cmo17g00573 . . . . . . . . . . . . . . Cla08g00447 Cam08g0877 Cec08g0458 Cco08g0579 Clacu08g0595 . Cre08g0417 . . . . . . . . . . . . Bpe05g01020 . . . . . . . Cma17g00591 Car08g00068 Car17g00546 Cpe12g00503 Cpe17g00993 . . . . . . . . . . . . . . . . . .
Vvi15g762 Blo01g00234 . Bda03g01005 Bda08g00117 . Bpe05g01020 Bma04g00902 Bma05g01240 Cmo08g00111 Cmo17g00573 . . . . . . . . . . . . . . . . . . . . . Cone14ag0405 Cone15ag0444 . . . . . . . . . . . Bpe04g00937 . . . . . Cma08g00105 Cma17g00591 Car08g00068 . Cpe17g01012 Cpe12g00503 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002816 2 2 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 7 6 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00573 Cmo_Chr17 FPKM 0.337255 0.0 0.723116 0.0 0.0 0.88727 0.0 0.0 0.0 0.0