Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00575 ATGGGATCGTGCCTCTCTGGGGACCGCAATAATCACGCGATCCCTTATTCTGAGATCGCTTCCACTTCTCGTGGTGATGGCGTTGTTACCAGAAGCAACTCCAATAGGAAGATTACGAAAAAGAGTTCTTCTCCCTCTATTGACTCTCCAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCATCAATCAGGACGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGCAGATACAATATTTTGCGGAGTCTTTGATGGACATGGTCCTTTCGGCCATATGGTTGCAAAGAAAGTCAGAGACTCTCTTCCTCTAAAACTGAGTGCACAATGGGAATTGGGATGTCAAGTCTCTCCACCAGTGCTGGTTAATAAGGATTCTGGAACCTCTCGGTGCGATCCTGGTCGTCTGGGCAGTTCCAATGACATTCATGTCATGTTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCTTTGATCAAACAGGGTCGGGATCTTATCATCGGAAATGTCGGGGACTCGAGGGCTGTTTTAGGTACCAGAGATCAATCGAACTCCCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGAGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCGAAATGAACCCGAGACTTTTCGGGTTTGGCTTCCCGACAGTGATTCTCCTGGCCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGACTTTGGCTTGATAGCCGTCCCTGATATTTCTTGTCATCATCTTAATGAGAAAGATGAGTTTGTTGTACTGGCTACCGATGGGGTTTGGGATGTACTTTCAAACGAAGAGGTTGTGGCAATTGTCGCATCTTCTCCAAGATCCTCTGCAGCTCGTATCGTTGTGGACACGGCTTCTCGAGCATGGAGATCGAAGTACCCTACTGCCAAAGTGGATGATTGTGCCGTAGTCTGCTTGTACCTGGACTCTAGTGAGAGTGCTACAGTGACAACTAAGGAGCAGCAGTTTCTTATAATTGGCTTTTGCATCAGGAGCTCACCAAAGACATGGAAACTTAGTAGTTCTCTCAGCTTGCTCGTCGTCGTTCTATCCCCCGAAACCTTTGATTGCCGCGCTTCATCAGGCGAGTTTTGA 1281 46.29 MGSCLSGDRNNHAIPYSEIASTSRGDGVVTRSNSNRKITKKSSSPSIDSPREMSLHRVPGRMFLNGSTDHASLFTRQGKKGINQDAMIVWENFGSKADTIFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELGCQVSPPVLVNKDSGTSRCDPGRLGSSNDIHVMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALIKQGRDLIIGNVGDSRAVLGTRDQSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALRNEPETFRVWLPDSDSPGLAMARAFGDFCLKDFGLIAVPDISCHHLNEKDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARIVVDTASRAWRSKYPTAKVDDCAVVCLYLDSSESATVTTKEQQFLIIGFCIRSSPKTWKLSSSLSLLVVVLSPETFDCRASSGEF 426
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
17 5906993 5912375 - CmoCh17G005750.1 Cmo17g00575 400958
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00575 426 MobiDBLite consensus disorder prediction 16 53 - -
Cmo17g00575 426 ProSiteProfiles PPM-type phosphatase domain profile. 70 370 IPR001932 -
Cmo17g00575 426 SUPERFAMILY PP2C-like 70 371 IPR036457 -
Cmo17g00575 426 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 378 - -
Cmo17g00575 426 SMART PP2C_4 59 368 IPR001932 -
Cmo17g00575 426 Pfam Protein phosphatase 2C 84 337 IPR001932 -
Cmo17g00575 426 Gene3D - 65 372 IPR036457 -
Cmo17g00575 426 MobiDBLite consensus disorder prediction 16 50 - -
Cmo17g00575 426 CDD PP2Cc 70 370 IPR001932 -
Cmo17g00575 426 PANTHER ALPHABET, ISOFORM E-RELATED 1 378 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00953 Cmo-Chr11:5012030 Cmo17g00575 Cmo-Chr17:5906993 8.39E-156 dispersed
Cmo17g00575 Cmo-Chr17:5906993 Cmo20g00582 Cmo-Chr20:2863747 1.02E-133 dispersed
Cmo17g00575 Cmo-Chr17:5906993 Cmo08g00081 Cmo-Chr8:420886 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00575 - - csv:101222320 662.529