Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00577 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGGTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGATGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGATGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCCGATGAAACTAGAGTAAGGAAGCAAGTTGGCTTATTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTCGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCCTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAGGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCGGAAAATATGAATTGGTATTTCTTCGGGCATTCATTGTCTTCTTTAATTTTTGCAAACTCTTTGAAGATTTTAAACTTTCCTGGAGTCTTCTTCTCATGTGCTTTTTCTTTTGTATTCTCATTGTTCCATCTTTTGTTCTTGTGCAAGACATTGAACATGATTAACAATGAGTTGATAGTCACGTGCTATGTTTGCGTGTCTGCACATAAGTTTCATTTATATTTTCCAATGAGGCATGAACAAGGGAAAAGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATCGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGCATGTACAAAACTATCCAACTATGAAACATCAGATTTCTTTGGTTTATTGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAACTTGCTGGTCTAACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCAGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGTACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCATTGA 2070 42.46 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWYFFGHSLSSLIFANSLKILNFPGVFFSCAFSFVFSLFHLLFLCKTLNMINNELIVTCYVCVSAHKFHLYFPMRHEQGKRILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQACTKLSNYETSDFFGLLIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSVRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHH 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5927996 5935796 + CmoCh17G005770.1 Cmo17g00577 400960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00577 689 SUPERFAMILY RING/U-box 370 417 - -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 648 662 - -
Cmo17g00577 689 Gene3D - 659 689 - -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 619 662 - -
Cmo17g00577 689 ProSiteProfiles Zinc finger RanBP2 type profile. 656 689 IPR001876 -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 619 639 - -
Cmo17g00577 689 SMART zf_4 663 687 IPR001876 -
Cmo17g00577 689 SUPERFAMILY RING/U-box 210 278 - -
Cmo17g00577 689 SUPERFAMILY Ran binding protein zinc finger-like 661 687 IPR036443 -
Cmo17g00577 689 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cmo17g00577 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Cmo17g00577 689 Gene3D - 267 618 - -
Cmo17g00577 689 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 350 634 - -
Cmo17g00577 689 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 291 - -
Cmo17g00577 689 SMART ibrneu5 357 424 IPR002867 -
Cmo17g00577 689 SMART ibrneu5 209 271 IPR002867 -
Cmo17g00577 689 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Cmo17g00577 689 Pfam IBR domain, a half RING-finger domain 372 415 IPR002867 -
Cmo17g00577 689 ProSiteProfiles TRIAD supradomain profile. 136 428 IPR044066 -
Cmo17g00577 689 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 350 634 IPR031127 GO:0004842|GO:0016567
Cmo17g00577 689 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 291 IPR031127 GO:0004842|GO:0016567
Cmo17g00577 689 Coils Coil 436 456 - -
Cmo17g00577 689 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Cmo17g00577 689 ProSitePatterns Zinc finger RanBP2-type signature. 665 684 IPR001876 -
Cmo17g00577 689 SUPERFAMILY RING/U-box 137 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00213 Cmo17g00577 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01003 Cmo-Chr12:9353963 Cmo17g00577 Cmo-Chr17:5927996 3.59E-132 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo20g00877 Cmo-Chr20:4428968 5.46E-18 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo08g00213 Cmo-Chr8:1264553 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00577 K11968 - csv:101223037 574.318