Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00577 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGATGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGGTATTACAGCGATGACGACGATCCTGACGCTGAAGATTTCGTGGACGATGAAACCGATGATTACTTCGACTCACGTCGACGCGAGCAAAATTATACCATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGATGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCATCAATTGTGTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCCGATGAAACTAGAGTAAGGAAGCAAGTTGGCTTATTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTCGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCAACTGCTGGGAAGGCTACATTACCACATCAATTAATGACGGTCCTGGATGTCTGGCGTTGAGATGTCCTGATCCCTCTTGCAGTGCTGTGGTTGATCAAGACATGATTAACTCATTGGTCTCGGATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAGGACAACAAAAAGACTAAATGGTGCCCCGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCCGGCAATGGAAATTATGATGTTTCTTGCCTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCAACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCGGAAAATATGAATTGGTATTTCTTCGGGCATTCATTGTCTTCTTTAATTTTTGCAAACTCTTTGAAGATTTTAAACTTTCCTGGAGTCTTCTTCTCATGTGCTTTTTCTTTTGTATTCTCATTGTTCCATCTTTTGTTCTTGTGCAAGACATTGAACATGATTAACAATGAGTTGATAGTCACGTGCTATGTTTGCGTGTCTGCACATAAGTTTCATTTATATTTTCCAATGAGGCATGAACAAGGGAAAAGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTACATTTGAATTTTGCTGGCTGTGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGACGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAAAGATACACTCACTATTACGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATCGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGCATGTACAAAACTATCCAACTATGAAACATCAGATTTCTTTGGTTTATTGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATTCATATGGATATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTGCTCCAGTTCGTCAGTGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAACTTGCTGGTCTAACCAGTGTTACTCGAAATTACTTTGAGAACCTAGTTAGAGCATTAGAGAACGGGCTTTCAGATGTGAATTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGTACGAGGTAAGGGAATCAGTCGAATCGGGAGCTCAACCAGAAGTGGCGATAATGCTGCAACTCATTGGTCATGTGAACACTGTACGTTTGTGAACACAAAATCTAGTAGCACATGCGAGATGTGCCATCAACAACACCATTGA 2070 42.46 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYSDDDDPDAEDFVDDETDDYFDSRRREQNYTILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCANCWEGYITTSINDGPGCLALRCPDPSCSAVVDQDMINSLVSDEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCLCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWYFFGHSLSSLIFANSLKILNFPGVFFSCAFSFVFSLFHLLFLCKTLNMINNELIVTCYVCVSAHKFHLYFPMRHEQGKRILANSKPCPKCKRPIEKNQGCMHMTCTPPCTFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQACTKLSNYETSDFFGLLIIECRRVLKWTYSYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFVSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSVRGKGISRIGSSTRSGDNAATHWSCEHCTFVNTKSSSTCEMCHQQHH 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5927996 5935796 + CmoCh17G005770.1 Cmo17g00577 400960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00577 689 SUPERFAMILY RING/U-box 370 417 - -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 648 662 - -
Cmo17g00577 689 Gene3D - 659 689 - -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 619 662 - -
Cmo17g00577 689 ProSiteProfiles Zinc finger RanBP2 type profile. 656 689 IPR001876 -
Cmo17g00577 689 MobiDBLite consensus disorder prediction 619 639 - -
Cmo17g00577 689 SMART zf_4 663 687 IPR001876 -
Cmo17g00577 689 SUPERFAMILY RING/U-box 210 278 - -
Cmo17g00577 689 SUPERFAMILY Ran binding protein zinc finger-like 661 687 IPR036443 -
Cmo17g00577 689 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cmo17g00577 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 223 IPR013083 -
Cmo17g00577 689 Gene3D - 267 618 - -
Cmo17g00577 689 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 350 634 - -
Cmo17g00577 689 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 291 - -
Cmo17g00577 689 SMART ibrneu5 357 424 IPR002867 -
Cmo17g00577 689 SMART ibrneu5 209 271 IPR002867 -
Cmo17g00577 689 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Cmo17g00577 689 Pfam IBR domain, a half RING-finger domain 372 415 IPR002867 -
Cmo17g00577 689 ProSiteProfiles TRIAD supradomain profile. 136 428 IPR044066 -
Cmo17g00577 689 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 350 634 IPR031127 GO:0004842|GO:0016567
Cmo17g00577 689 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 291 IPR031127 GO:0004842|GO:0016567
Cmo17g00577 689 Coils Coil 436 456 - -
Cmo17g00577 689 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Cmo17g00577 689 ProSitePatterns Zinc finger RanBP2-type signature. 665 684 IPR001876 -
Cmo17g00577 689 SUPERFAMILY RING/U-box 137 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00577 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 574.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00213 Cmo17g00577 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01003 Cmo-Chr12:9353963 Cmo17g00577 Cmo-Chr17:5927996 3.59E-132 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo20g00877 Cmo-Chr20:4428968 5.46E-18 dispersed
Cmo17g00577 Cmo-Chr17:5927996 Cmo08g00213 Cmo-Chr8:1264553 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00422 . 164 590 ARIADNE family AT4G34370 71.3 2.7e-182 635.6
Cmo20g00877 . 164 589 ARIADNE family AT4G34370 71.5 8.6e-181 630.6
Cmo02g00422 . 58 527 ARIADNE family AT2G16090 78.2 7.2e-224 773.9
Cmo20g00877 . 58 542 ARIADNE family AT2G16090 76.8 7.9e-223 770.4
Cmo20g00877 . 33 543 ARIADNE family AT3G27710 61.6 2.7e-184 642.5
Cmo02g00422 . 36 522 ARIADNE family AT3G27710 62.2 2.6e-182 636.0
Cmo02g00422 . 47 522 ARIADNE family AT3G27720 54.2 2.8e-143 506.1
Cmo20g00877 . 44 522 ARIADNE family AT3G27720 53.6 6.9e-142 501.5
Cmo12g01003 . 25 550 ARIADNE family AT1G05890 65.1 2.8e-222 768.8
Cmo17g00577 CST 61 631 ARIADNE family AT1G05890 60.6 3.8e-203 705.3
Cmo08g00213 CST 54 467 ARIADNE family AT1G05890 73.7 3.5e-188 655.6
Cmo12g01003 . 25 545 ARIADNE family AT1G65430 78.6 8.5e-253 870.2
Cmo17g00577 CST 16 685 ARIADNE family AT1G65430 59.3 7.0e-231 797.3
Cmo08g00213 CST 55 527 ARIADNE family AT1G65430 70.4 1.9e-207 719.5
Cmo12g01003 . 23 460 ARIADNE family AT2G31780 55.3 9.0e-149 524.2
Cmo08g00213 CST 58 392 ARIADNE family AT2G31780 56.8 6.9e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00577 Cmo_Chr17 FPKM 0.287987 0.0 0.0 0.092372 0.555046 1.289451 1.10312 1.824627 1.380726 1.697496