Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00580 ATGGGGGTTATGTCTAGGCGGGTTATTCCTGCCTGTGGTAGCATCTGTTTCTTCTGTCCTTCTATGCGGGCGAGATCAAGACAGCCTGTGAAACGATACAAGAAGTTCCTTGCTGATATATTTCCTCGTAATCAGGATGCTGAACCAAATGATAGACAAATTTGTAAACTCTGTGACTATGCTTCAAAGAACCCGTTGCGTATTCCCAAGATTACCGAACACCTGGAGCGAAGATGCTACAAAGATTTGCGGAATGAGAACTTTGGATATGTGAAAGTTGTAATATGTATATACAGAAAACTTCTATTAATGTGCAAAGACCAGATGCCACTATTTGCTAATAGCTTAATTGGGATTTCTCGAACTCTTTTAGAACAAACACGGCATGATGATGTGCAGATTCTTGGTTGCAATATCCTTGTTGATTTCATACGTAGCCAGACAGATAATACATATATGTTCAACTTAGAGGGCATCATTCCAAAACTTTGCCAATTGGCTCTAGAAGGTGAGAGTAATGGGGAGGCACCTCATTTGCGGTCAGCTGGACTTCAAGCTCTAGCTTCTATGATATTGTTCATGGGCGAGCAATCTCACATCTCAATGGACTTTGACAAAATTATATCAGTGGTTTTGGAGAACTACGTAGTAGATGGACAGTATTCTCATTCAGAGGCTCAGTACATTGAAGGACAGGATAAAGTAGAAAACCATAGCTCTTCTATATTAGATGTTAATCAAAAGGTCTCAACATTTAACCATTTTATCAATTTGGAAGCTGAAACGGATATGTCCAAGAACCCTTCTTATTGGTCTAGAGTTTGCTTGTGTAATATGGCTAGATTGGCAAAGGAAGCTACAACTGTCAGGCGTATGTTTGAACCTCTATTTCATCATTTTGATACTGAAAATCAATGGTCATTAGAAAAAGGACTTGCCTGCTCGGTATTGTCATTTATGCAATCGCTTTTGGCTGAATCAGGTGACAACTCGTATCTTTTGTTTCCGATTCTTGTCAAGCACTTGGATCATAAAAGTATTGTAAAAGAGCCTCAGATTCAAACAGATATTATCAATGTAACCACACAACTTGTTCAAAATGCAAAACCGCTAGCCTCGGTTACTATTATTGGGGCTATCACTGATTTGATAAAACATCTACGGAAGTGCCTACTATGTTCATCTGAAGCATCTAGCAATGGACGCGACACAGATAAATGGAGTACCGACCTTCAGTTGGCATTGGAAAATTGCATTTCTCAGCTCTCAAAGAAGGTAGGGGATGCGGGACCCATACTTGATACGCTAGCTGTTGTGCTGGAGAATATTCCAAATAATAATATTTCAGCTCGAGCAACAATATCCGCTATTTATCAGACTGCAATGGCGGTATCATCTATTCCTAATGTTTCTTATTACAGGAAGGCTTTTCCTGATGCTCTATTTCATCAGTTGCTTTTAGCAATGGCTCACCCTGATCTCGAGACTCGAATTGGAGCCCACGACATTTTCTCTATAGTGCTTATGCCATCCATTAAGTGTCCTAGGATGGAACTGAATGCGATTTCCTCAAAACATGTTTCATGGTTACCATTTGGCTGTGCAACACAGAAATTGATTAGTGGAAGTTTCTCCTTTAAAGATGAAGACAAACATGCATCAGAACCCATAAATGGGGTACGAATGGAAGAAAGTCAACCAGTCGACTTAATCACCGAGAAATCTGTCACACATCCATCTATGCATGGATCCTCCAGCTTCAATCACATTTTCAGCGAGGCAAAAACTAAGTTGACTTCCCTCCGGTTAAGCAGTCACCAAGTGAGTCTCCTGCTCTCGTCAATCTGGGTTCAAGCTACATCTTCGGATAATACCCCTGCAAATTTTGAGGCTATGGCCCACACTTATAGCATAGCTTTGCTATTTACCCGGTCTAAGACTTCAAGCCACATGGCTCTCGTACGATGTTTTCAGCTGGCATTTTCCCTTCGAAGCATAGCTGTGGATCAAGAAGGCGGTTTACCACCCTCTCGCAGAAGATCTCTCTTCTCCATGGCATCGTTTATGCTTCTGTTTTCAGCCCGGGCGGGTGGTCTCCCAGAGTTGACTCCCATCATTAAAGCATCATTAGATAATAAAATGGTTGATCCTCACCTTCAGTCGGTTAATGATACCAGGCTGCAGGCTGTTCGTGTGTCGTCTGGAAAGGATAGTGTAGCATTTGGGTCAGAAGAAGATGAATTCGCTGCAAAGAAGTTTCTAGCAACACTTGAATTAGATGAACAGCAGTTGAAGGAAACTGTGGTCTCACACTTTACGATTAAATATGCCAATCTCTCAGAGGCTGATCTATCAAGTGTTAAAGAGCAGCTTTTACACGGGTTTTCGCCTGATGAGGCATACCCGTTAGGAGCTCCATTATTTATGGAGACACCACATTCAAGTTCTCCACTTGCTAAGCTGGCATTTCCAGATTATGATGAGGGTATGTCTCCTGATGTTTTGACAGATGACGAAGCCTTCCTCGAGCCTAGTGGAAGCCAGTCCAATCATAAAACATCAATTTCTATCAGTAACCTCGACATTCTAAGCGTTAATCAGCTTTTGGAATCAGTGCTCGAAACAGCCAGACAGGTTGCGAGCTTCCCAGTTTCTTCGGCACCTGTTCCGTATGATCAAATGAAAAGTCAATGTGAGGCCCTCATAACTTGCAAACAGCAGAAAATGTCGGTGCTTCATAGTTTCAAGCACAAAAAGGAAGACACAAAGGAAGAGAAGGCAATAGTACTCTCCAGTGAAATTGAAACTTTACCTTCTCCTTTACCTGTCAATACAATGGAAATCGTTCCGGGGGATGTGAAGTATTATACTAAGGAGACCAACAAAAGACACGATCAGCCGCTTCTTTGTTCACATGAATATGGGCGTCACTCGTTAAGGTTACCTCCTTCAAGTCCATATGACAAATTCTTAAAAGCTGCTGGATGCTAG 2991 41.76 MGVMSRRVIPACGSICFFCPSMRARSRQPVKRYKKFLADIFPRNQDAEPNDRQICKLCDYASKNPLRIPKITEHLERRCYKDLRNENFGYVKVVICIYRKLLLMCKDQMPLFANSLIGISRTLLEQTRHDDVQILGCNILVDFIRSQTDNTYMFNLEGIIPKLCQLALEGESNGEAPHLRSAGLQALASMILFMGEQSHISMDFDKIISVVLENYVVDGQYSHSEAQYIEGQDKVENHSSSILDVNQKVSTFNHFINLEAETDMSKNPSYWSRVCLCNMARLAKEATTVRRMFEPLFHHFDTENQWSLEKGLACSVLSFMQSLLAESGDNSYLLFPILVKHLDHKSIVKEPQIQTDIINVTTQLVQNAKPLASVTIIGAITDLIKHLRKCLLCSSEASSNGRDTDKWSTDLQLALENCISQLSKKVGDAGPILDTLAVVLENIPNNNISARATISAIYQTAMAVSSIPNVSYYRKAFPDALFHQLLLAMAHPDLETRIGAHDIFSIVLMPSIKCPRMELNAISSKHVSWLPFGCATQKLISGSFSFKDEDKHASEPINGVRMEESQPVDLITEKSVTHPSMHGSSSFNHIFSEAKTKLTSLRLSSHQVSLLLSSIWVQATSSDNTPANFEAMAHTYSIALLFTRSKTSSHMALVRCFQLAFSLRSIAVDQEGGLPPSRRRSLFSMASFMLLFSARAGGLPELTPIIKASLDNKMVDPHLQSVNDTRLQAVRVSSGKDSVAFGSEEDEFAAKKFLATLELDEQQLKETVVSHFTIKYANLSEADLSSVKEQLLHGFSPDEAYPLGAPLFMETPHSSSPLAKLAFPDYDEGMSPDVLTDDEAFLEPSGSQSNHKTSISISNLDILSVNQLLESVLETARQVASFPVSSAPVPYDQMKSQCEALITCKQQKMSVLHSFKHKKEDTKEEKAIVLSSEIETLPSPLPVNTMEIVPGDVKYYTKETNKRHDQPLLCSHEYGRHSLRLPPSSPYDKFLKAAGC 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 5993448 6004160 - CmoCh17G005800.1 Cmo17g00580 400963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00580 996 SUPERFAMILY ARM repeat 82 507 IPR016024 -
Cmo17g00580 996 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 996 - -
Cmo17g00580 996 PANTHER PUTATIVE, EXPRESSED-RELATED 1 996 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00580 K21842 EFR3; protein EFR3 - csv:101203725 1627.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00209 Cmo17g00580 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00486 Cmo-Chr14:2403798 Cmo17g00580 Cmo-Chr17:5993448 0 dispersed
Cmo17g00580 Cmo-Chr17:5993448 Cmo08g00209 Cmo-Chr8:1226922 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1204 . . . . . Bpe14g01040 . . Cmo08g00209 Cmo17g00580 . . . . . . . . . . . . . . Cla08g00479 Cam08g0897 Cec08g0489 Cco08g0600 Clacu08g0616 . Cre08g0435 Cone14ag0570 . . . . . . . . Blo07g00084 Bda11g00454 . . Bpe13g00741 Bma02g00988 Bma06g01414 . . . . Cma17g00600 Car08g00182 . Cpe12g00510 Cpe17g01095 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004009 1 6 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 5 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00580 Cmo_Chr17 FPKM 9.805555 13.408768 6.329999 9.791984 8.994058 5.29597 9.378241 6.89057 7.523023 8.876004