Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00587 ATGGAAGTGCAAGATCATGGTCACATAATTGAAGTATGTGGGGATGTGCAAGCTGTAGGGCCTAGCATCGTGGGAAGTAAAATTTGTGGGGATGCACCCTCTTGTGGATTTTCTGATGCAAAAAATAGTTCAAATGATGCAAAGGAGCGAGCTGCATCCATGCGGAAGCTTTTCATAGCAGTTGTTCTCTGCATTGTTTTTATGAGTGTAGAAGTAGTGGGAGGTATTAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCCATTTCTTTGTTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCGCGTCAGTCATATGGCTTCTTCCGCATCGAAATTCTTGGTGCTCTCGTTTCCATTCAAATGATCTGGCTTCTTGCTGGAATCCTTGTTTACGAAGCTATTGTTCGACTTATCAATGGTCCGGGTGAAGTCAAGGGGTTGCTCATGTTCGCTGTGTCTGCATTCGGGTTAGTTGTTAACATAGGTATGGCTCTGCTGCTAGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAGTCATGGACATGGCGAGCATGACCATGGTCATGGCAAACATGAACATGGCGGTGAAGGTCATGGGCATCATCATGGGATAAGTATTACTACGCACCACCACGACCACCAAGAAGGAAAGGGAGCTGCCAGCGATCATCATGCTCCCACGGAACCAGTAACGACACCCTTGCTTGAGGGTGGCTGTGAAGATGGAAGAAGTCATTCACCAAAGGTTATCAAGATGCAAAAGAAGCAACGAAATATAAATGTACAAGGGGCTTATCTTCATGTACTTGGAGATTCGATCCAAAGCATTGGGGTGATGATCGGCGGGGCAATCATATGGTATAAACCCGAATACAAGATTCTTGATCTGATATGCACCCTGATTTTCTCTGCAATTGTTCTGTGCACAACAATTCAAATGCTTCGAAATATCCTCGAGGTATTAATGGAGAGCACACCGCGAGAGATCGACGCAACAAAGCTCGAAAAGGGTTTGTGCGAGATGGATGAGGTAGTTGCAATACATGAACTGCACATCTGGGCCATAACTGTTGGGAAGATTCTACTGGCATGCCATGTTATAATAAAGCCGGAGGCTAATGCAGACATGGTATTGGATAAGGTTATTGATTATATTAGAAGAGAGTACAACATAAGCCATGTCACCATTCAGATAGAGCGTCAGTAG 1248 45.03 MEVQDHGHIIEVCGDVQAVGPSIVGSKICGDAPSCGFSDAKNSSNDAKERAASMRKLFIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGLLMFAVSAFGLVVNIGMALLLGHEHGHAHSHGHSHGHGEHDHGHGKHEHGGEGHGHHHGISITTHHHDHQEGKGAASDHHAPTEPVTTPLLEGGCEDGRSHSPKVIKMQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYKILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREIDATKLEKGLCEMDEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIDYIRREYNISHVTIQIERQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6223803 6230905 - CmoCh17G005870.1 Cmo17g00587 400970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00587 415 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 342 413 IPR036837 -
Cmo17g00587 415 Gene3D Cation efflux protein transmembrane domain 53 335 IPR027469 -
Cmo17g00587 415 MobiDBLite consensus disorder prediction 184 257 - -
Cmo17g00587 415 Pfam Cation efflux family 57 336 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cmo17g00587 415 SUPERFAMILY Cation efflux protein transmembrane domain-like 53 337 IPR027469 -
Cmo17g00587 415 PANTHER METAL TOLERANCE PROTEIN A1 4 414 - -
Cmo17g00587 415 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 4 414 - -
Cmo17g00587 415 TIGRFAM CDF: cation diffusion facilitator family transporter 54 415 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cmo17g00587 415 MobiDBLite consensus disorder prediction 192 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00657 Cmo-Chr1:3357335 Cmo17g00587 Cmo-Chr17:6223803 3.91E-96 dispersed
Cmo02g00960 Cmo-Chr2:5891255 Cmo17g00587 Cmo-Chr17:6223803 0 dispersed
Cmo11g01080 Cmo-Chr11:6053691 Cmo17g00587 Cmo-Chr17:6223803 1.88E-13 dispersed
Cmo17g00587 Cmo-Chr17:6223803 Cmo14g00634 Cmo-Chr14:3192929 1.44E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00587 K14689 - csv:101213602 642.114