Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00588 | ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAGGTTCATGCTGCTAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATTCCTCCACAACAAGTTCCTAACTTCACATCCCCTTGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACTTCACACGCAGGTAGTGCATTCACATGCAGACAGACAAAGTCGAGCACGTCATACAAAAAGCCCAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCCGATCTTGGATGA | 714 | 47.06 | MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCMKDVDKVKMEPPNPKNPQVPAKIPPQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHAGSAFTCRQTKSSTSYKKPRIEMVDDEEFFTVPDLG | 237 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6236889 | 6240061 | + | CmoCh17G005880.1 | Cmo17g00588 | 400971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00588 | 237 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 237 | - | - | |
Cmo17g00588 | 237 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | PANTHER | B-BOX ZINC FINGER PROTEIN 24 | 1 | 237 | - | - | |
Cmo17g00588 | 237 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cmo17g00588 | 237 | Gene3D | Classic Zinc Finger | 1 | 120 | - | - | |
Cmo17g00588 | 237 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | Pfam | B-box zinc finger | 53 | 95 | IPR000315 | GO:0008270 | |
Cmo17g00588 | 237 | CDD | Bbox1_BBX-like | 56 | 98 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00198 | Cmo17g00588 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g00380 | Cmo-Chr12:2352746 | Cmo17g00588 | Cmo-Chr17:6236889 | 5.80E-38 | dispersed | |
Cmo16g00458 | Cmo-Chr16:2198493 | Cmo17g00588 | Cmo-Chr17:6236889 | 8.12E-09 | dispersed | |
Cmo17g00588 | Cmo-Chr17:6236889 | Cmo20g00825 | Cmo-Chr20:4095081 | 1.88E-32 | dispersed | |
Cmo17g00588 | Cmo-Chr17:6236889 | Cmo08g00198 | Cmo-Chr8:1172012 | 4.72E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11392 | PF00643 | zf-B_box | 6.60E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00588 | - | - | csv:101215327 | 451.44 |