Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00588 ATGAAAATACAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAGGTTCATGCTGCTAATAAGCTTGCGAGTAAACACCAGAGGCTTCTCCTTCAGTGCCTCTCCACCAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGATGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCTATGAGCTCAAGTTGCATGAAGGACGTCGACAAGGTGAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTCCTGCTAAAATTCCTCCACAACAAGTTCCTAACTTCACATCCCCTTGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAACAACTAGAGTTTGGGGAGTTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAGGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCCGAGCTTCCTACTTCACACGCAGGTAGTGCATTCACATGCAGACAGACAAAGTCGAGCACGTCATACAAAAAGCCCAGGATCGAGATGGTAGACGATGAGGAGTTTTTTACAGTTCCCGATCTTGGATGA 714 47.06 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCMKDVDKVKMEPPNPKNPQVPAKIPPQQVPNFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHAGSAFTCRQTKSSTSYKKPRIEMVDDEEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6236889 6240061 + CmoCh17G005880.1 Cmo17g00588 400971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00588 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmo17g00588 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo17g00588 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo17g00588 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cmo17g00588 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmo17g00588 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cmo17g00588 237 CDD Bbox1_BBX-like 5 47 - -
Cmo17g00588 237 Gene3D Classic Zinc Finger 1 120 - -
Cmo17g00588 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cmo17g00588 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmo17g00588 237 CDD Bbox1_BBX-like 56 98 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00198 Cmo17g00588 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00380 Cmo-Chr12:2352746 Cmo17g00588 Cmo-Chr17:6236889 5.80E-38 dispersed
Cmo16g00458 Cmo-Chr16:2198493 Cmo17g00588 Cmo-Chr17:6236889 8.12E-09 dispersed
Cmo17g00588 Cmo-Chr17:6236889 Cmo20g00825 Cmo-Chr20:4095081 1.88E-32 dispersed
Cmo17g00588 Cmo-Chr17:6236889 Cmo08g00198 Cmo-Chr8:1172012 4.72E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11392 PF00643 zf-B_box 6.60E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00588 - - csv:101215327 451.44