Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00590 ATGGTAATTTTGTCATCTTGTTTTACAACCAAACCGTTCCCCCAAATTTCATTTCCGAATCCCTATTTCCCTCTGCAAAACCTAACCCTATCTTCAATACAAGAATTCTTTCTCAACCTCAACCTCAACCTCAATCCTCTCTCTCGTCGACACATTTCCTTTGCACTAATTCATTCGCTCTGCAAACTCGGTGACCAAAGCCCAAAGGTGAATTTAGTCTCTGTTTCTTCGTTTTTGATTACAATGCCGCTTCCTCCCAAACTGAGCCGACCACTACTGCACAGGGACTCGGACGTTGCGGAGATGTCTTCCAACAGCTTATGGGTCGGAAACTTGTCCATGGATGTCACCGATGCGGATCTCATGAATTTGTTTGCGCAGTTTGGTGCGCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTTCGCTTTCATCTACTTCAAGCATATGGAGGATGCCCAAGCGGCTAAGGATGCTCTTCAGGGTTATTTTCTGCGTGGGAGTTCTATCAAGATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAGCAACTCGAAGAGGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATAGGAATACAGCATTTATTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATTATGAATGGAAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCTGACACCAGAGATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGGATGGGAGATTTCCAATCTGGTTATAAAAGACCACTGCATGCTCAATCTTCAGAGTTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTATCCTCCATCTGTTCAAATTGATGAGCAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGACAGAATTACAAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCACGGCGTGCGAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGCACCTGTGAAAGAGAACCTTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGATATGTTTTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACTTGTTGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCACTGCCATCTAGTGGCATTCTTGGACAAAATACGGCAGTAAGACCACCGCCCTTTGGTCCTCCACAGGGTATCTCAGGCCCCCCAGAATTTAATGACTTGGTGACATCTCATAGTTTTCAGGATGCAAATTCAAAAAATATGATTGGTTCAAATTGGAGAAGGCAATCTCCTCCGACACCAGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCGGTCAGGTCCACTCCAAGTACGTGGGATGCTTTGGATGTAAATCAATTCCATAGGGATTCTAAACGTTCAAGGATAGATGGTCCAACATCCTTAGATGATGCTGCTTTTCCTCCAAGAAAAATGGATAACCGGAGCATGGGTTTTGATCAGCAATATGGGGTTCGTCCAATAAGTGATGGAGGTTCTTCTCTTCCATATGCCAATGCTCCAGCAAAGACTCCTGCTATACCTATAGTTGCAAGGGCTCCAGTTAGTGGTCGTGGCCAGAGCCATGCTGAAAATGATTTTGTATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGTCATGCTCGTTGTGTTCCAATAGGCGAAGGAATAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAGGCCACTGGATTCGACATCGTCTTTTTCTTGCCAGATAGCGAGGATGATTTTGCATCCTATACCGAATTCCTGCGTTATCTAGGTGCAAAAGATCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTTCTGGTCCAGAACGGCTTTATGGTCTTGTTCTCAAATTTCCTCAGGTGTCTATTAGTGAACCTACTCACCAACAATCATATCTGCCCATGCCTACATCTGACTATGGTGAGAGACAGCTGGTTTTGTCTTCACAAACTGAATATGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCCGATGGATTATAATAGGGTTTTGCATGATGAAATTAAGGAGCCCCCAAAAACACTTCTGCCAGCAAGTGAGCCATCAGCAGTTCAGCCCTTGCCTCAAGAATATGTTGCTAATAATAATACGGCTGCAATCTCACAAGCTGGGTTAACATTAACACCCGAGCTTATTGCTACCTTGGTTTCGTTACTGCCTGGTAAGTCACAGTCATCTAGTTTAGAAAGTGCCAAACAACCGGCAGCCTCACCACAACCTCCAGTTACTCCTGTTGTTTCTAATAAAGGGGCTACATCTGAGGGATGGATGGTTGGTCATCAATCTTCTGATCAAACCGGTCAGCCATTTCAGCAAATGGGAAATCATTATAATCCTCAGAGTCACAGCCTTTCTCAATTTCAACCTTATCCACCTCTCCCTCAGACACCTAACCAGCTTGCACCACAGGCCACGGGAACCACTCAAATCCAAGAAGCTGCTGTCAGTCTGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGTTACCTATTCCTTACAGGCCTTTATCTACGTATTCTGCCCCTCCTGAAAATGCACAAGCTTCTGGTCTGCCCTTGGTCAATCCTCAGTATCATCATGATAATTCGCAAATTAGCCAGAGAGGTTATGGGTCGGTCAATGGAGTTGACACATCTGGCTATGGTGCACCAGTTATGCAGCAATCAGCAAATACTGTGACCTTATCTAATCAAGGTCAGGGTTCTATGACACAGTCACAACCTATTACTCAATTAGCATCTGATAGGGTGAATTCCGAGCCTCCTTATCAGATGCAGCATTTGCAATCTGCAAACCTTGGCACTGGCACTGGGAGCAGTGATGCTGAGGCAGGCAAGGACCAGAGATATCGATCTACACTCCAATTTGCTGCCAATTTACTCCTCCAGATTCAGCAGCAGCAGCAGCAGAAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 3273 44.97 MVILSSCFTTKPFPQISFPNPYFPLQNLTLSSIQEFFLNLNLNLNPLSRRHISFALIHSLCKLGDQSPKVNLVSVSSFLITMPLPPKLSRPLLHRDSDVAEMSSNSLWVGNLSMDVTDADLMNLFAQFGALDSVTSYSSRSFAFIYFKHMEDAQAAKDALQGYFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFIEYVRLEDASQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDTRDGHGQLQGRNVGMGDFQSGYKRPLHAQSSELRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIDRITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKENLGFYPGGKETRPDMFFNEHQIRPPQMDLLGHPHPMVQNKFPGPLPSSGILGQNTAVRPPPFGPPQGISGPPEFNDLVTSHSFQDANSKNMIGSNWRRQSPPTPGILSSPATGIRPPPPVRSTPSTWDALDVNQFHRDSKRSRIDGPTSLDDAAFPPRKMDNRSMGFDQQYGVRPISDGGSSLPYANAPAKTPAIPIVARAPVSGRGQSHAENDFVWRGIIAKGGTPVCHARCVPIGEGIGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKDRAGVAKFDDGTTMFLVPPSEFLRKVLKVSGPERLYGLVLKFPQVSISEPTHQQSYLPMPTSDYGERQLVLSSQTEYGSVPSKQEQLPMDYNRVLHDEIKEPPKTLLPASEPSAVQPLPQEYVANNNTAAISQAGLTLTPELIATLVSLLPGKSQSSSLESAKQPAASPQPPVTPVVSNKGATSEGWMVGHQSSDQTGQPFQQMGNHYNPQSHSLSQFQPYPPLPQTPNQLAPQATGTTQIQEAAVSLPQQQQQQQQQLPIPYRPLSTYSAPPENAQASGLPLVNPQYHHDNSQISQRGYGSVNGVDTSGYGAPVMQQSANTVTLSNQGQGSMTQSQPITQLASDRVNSEPPYQMQHLQSANLGTGTGSSDAEAGKDQRYRSTLQFAANLLLQIQQQQQQKQAGWGSGNQ 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6258442 6271254 - CmoCh17G005900.1 Cmo17g00590 400973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00590 1090 Gene3D - 94 178 IPR012677 -
Cmo17g00590 1090 MobiDBLite consensus disorder prediction 836 901 - -
Cmo17g00590 1090 CDD RRM3_Spen 107 176 - -
Cmo17g00590 1090 PANTHER RNA RECOGNITION MOTIF-CONTAINING 91 1090 - -
Cmo17g00590 1090 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 248 IPR000504 GO:0003723
Cmo17g00590 1090 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 371 IPR000504 GO:0003723
Cmo17g00590 1090 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 171 IPR000504 GO:0003723
Cmo17g00590 1090 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 177 IPR000504 GO:0003723
Cmo17g00590 1090 MobiDBLite consensus disorder prediction 524 549 - -
Cmo17g00590 1090 CDD RRM3_Spen 184 253 - -
Cmo17g00590 1090 SUPERFAMILY RNA-binding domain, RBD 97 179 IPR035979 GO:0003676
Cmo17g00590 1090 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 91 1090 - -
Cmo17g00590 1090 Gene3D - 293 385 IPR012677 -
Cmo17g00590 1090 SUPERFAMILY RNA-binding domain, RBD 179 277 IPR035979 GO:0003676
Cmo17g00590 1090 SUPERFAMILY RNA-binding domain, RBD 300 384 IPR035979 GO:0003676
Cmo17g00590 1090 Gene3D - 179 292 IPR012677 -
Cmo17g00590 1090 SMART rrm1_1 106 173 IPR000504 GO:0003723
Cmo17g00590 1090 SMART rrm1_1 306 374 IPR000504 GO:0003723
Cmo17g00590 1090 SMART rrm1_1 183 250 IPR000504 GO:0003723
Cmo17g00590 1090 MobiDBLite consensus disorder prediction 477 511 - -
Cmo17g00590 1090 Pfam SPOC domain 594 713 IPR012921 -
Cmo17g00590 1090 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 254 IPR000504 GO:0003723
Cmo17g00590 1090 MobiDBLite consensus disorder prediction 836 900 - -
Cmo17g00590 1090 MobiDBLite consensus disorder prediction 477 492 - -
Cmo17g00590 1090 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 378 IPR000504 GO:0003723
Cmo17g00590 1090 CDD RRM3_Spen 307 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00590 - - - cmos:111456063 2139.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00197 Cmo17g00590 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00962 Cmo-Chr16:6368749 Cmo17g00590 Cmo-Chr17:6258442 5.36E-12 dispersed
Cmo17g00590 Cmo-Chr17:6258442 Cmo20g00692 Cmo-Chr20:3416859 2.71E-06 dispersed
Cmo17g00590 Cmo-Chr17:6258442 Cmo08g00197 Cmo-Chr8:1154353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00590 Cmo_Chr17 FPKM 44.954926 51.466049 65.761818 67.688858 30.359694 27.025578 31.247442 63.451939 59.385124 64.131645