Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00591 ATGGCGAATCTCGTTCCTGGAGTGCTTCTCAAACTGCTACAGCACATGAACACAGATGTGAAGGTTGCTGGAGAACACAGGTCGGCGCTGTTGCAAGTTGTGAGCATAGTGCCGGCATTGGCCGGCGGCGATCTCTCTCCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCCACATATGTGTCACTCCCTGATGAACATGGTGAACTGATTCTTAGTGATAATATTCAATTGGGTCAGTTTATTCATATCGAACGCCTTGAGGCTGCTTCCCCTGTCCCCATTCTTCATGGTGTTCGACCTGTGCCTGGTCGACATCCTTGTGTGGGTACCCCTGAAGATATTGTTGCTACTCATTCTCCTGGGTTTCTTAACAATAATCCTGATCTGAAACCTATGGATAAATTGAAACCAACCCCAAAAGTTGGCATTGGCGTTAGTGGGGAGAAGGAGAAATCTGTGGCTGAGAGGCTCAATGGCAATGCCAAGGAGGATAAAATTGAGAAAAGAGCCTCACTCTTGTGTAGATCCAAGTCTCAGTTGTCGTCGAAATTGACAGTGAATATAGATGTGAAGAAGAAGCCTTTGCGGTCGATGCCTTCATCTCCGACGAGCTGTTATTCGTTACCTTCTTCATTTGAGAAGTTTTCGAACAGCATTAAGCAGCAGGGGAAGGTTAAGCCATTGGCTAATGTAACAACCAAGGTAGGAGCGGTCGAAAAGAACTCGATTCGTTCAGCTAGTCCTGTTGCCAAGAAGATGGGAATGGGACATCAGATCCAACATTTAGTTCAGGGCATTGAGGTTGGAGCCAAGGGTCTGAGGAAGAGTTGGGAAGGGAACAACATGGAGACGAAAAGAAGAGACAATTCGATATTAAGAGCTAGCAAACTTGATGCCAAGCCCGAAGCTCGGGTTACTACTCCTAGAAGAAGTACATTGAGTGACAAGGTAGCAGCAAAGTCATCTAAAGATGATTCTTCAAAGAAGAATGCTGCCAATGGAGCTCTAGATAATGAGGATAGGTCGAATAGGAAAAAATGTTCGAATGGAAAGAAATCATCTTCAAGCGATGCAGTCGGGTTCCCCGGGAACTTGGTGAAGGTTCCTCTTAGTCATAGAAGATTGACTGAAGGGAGTGTTTCATGGGGTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTGATGAGGCACAGAGATGCTGCACAAACAGCAGCAATAGAGGCTATGCAAGAAGCATCGGCGGCAGAGAGCTTACTACGATGTTTAAGTATATTTTCAGAGTTAAATTCTACTGCGAAGGAGGACAACCCACAGCCTGCGGTAGAACAGTTTCTGACCCTTCATGCTAGCCTAACCAATGCTCACATGGTAGCTGAATCACTTTCAAAAACTACTCCATCTGGTTCGACCAATGAGACCGAAGAAACCGCTTCGGAAGAACCAATGAAGGTCACATTAATGGCAAGAAGACAGGCATCTGCTTGGGTTCAGGCTGCTTTAGCCACCAATCTTTCATCGTTTGCAGTTTACAGCCGTGATCCACCCTCGACTCTAAACCCGACCTTACATCTATCCCAAAACCAAAAGAATACATCTGCAAATCATCCTATAGTGGTTTTAGATAACTCATCTAAGAATAGCTCGTCGAAATCCCAAGGGAAGATCCGCCAGATGATAAGCGCTAAACCCGTTGGATCAGGAAATCCAAGTCGAACAAAGGAAGGAGCAACGACACTCGGTCAGAAGGTGCAGCCTCAACCTCCAGCAGAATGGATAAGAGGAAACGGGGTTGACGAAGCAGTCGAGTTGGGTGAGACGTTACGAGTGCAATCCCAGGACTGGTTCTTGAGATTCATGGAAAGGTTCTTGGATGCAGGTGTGGACACTGCAGCCTTGTCGGATAATGGACAAGTAGCAGGAATATTGACTCAGCTGAAGAGTGTAAACGACTGGTTAGATGGAATAGCTTGTTGTAGCAAGGATGAAGAAGACACAGCTCACATTCAAACCGAGACGATCGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTGATGCACGTCGAGTCTGCAGCCGCTGCACTGGGCGGGGGATCCCAGCCAGTGCCACAGCAGATCGAGGCAACCGAAACAAAAGCAAGAAGGTGA 2166 46.58 MANLVPGVLLKLLQHMNTDVKVAGEHRSALLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGELILSDNIQLGQFIHIERLEAASPVPILHGVRPVPGRHPCVGTPEDIVATHSPGFLNNNPDLKPMDKLKPTPKVGIGVSGEKEKSVAERLNGNAKEDKIEKRASLLCRSKSQLSSKLTVNIDVKKKPLRSMPSSPTSCYSLPSSFEKFSNSIKQQGKVKPLANVTTKVGAVEKNSIRSASPVAKKMGMGHQIQHLVQGIEVGAKGLRKSWEGNNMETKRRDNSILRASKLDAKPEARVTTPRRSTLSDKVAAKSSKDDSSKKNAANGALDNEDRSNRKKCSNGKKSSSSDAVGFPGNLVKVPLSHRRLTEGSVSWGSLPSSLAKLGKEVMRHRDAAQTAAIEAMQEASAAESLLRCLSIFSELNSTAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTTPSGSTNETEETASEEPMKVTLMARRQASAWVQAALATNLSSFAVYSRDPPSTLNPTLHLSQNQKNTSANHPIVVLDNSSKNSSSKSQGKIRQMISAKPVGSGNPSRTKEGATTLGQKVQPQPPAEWIRGNGVDEAVELGETLRVQSQDWFLRFMERFLDAGVDTAALSDNGQVAGILTQLKSVNDWLDGIACCSKDEEDTAHIQTETIDRLRKKIYEYLLMHVESAAAALGGGSQPVPQQIEATETKARR 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6272311 6275587 - CmoCh17G005910.1 Cmo17g00591 400974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00591 721 MobiDBLite consensus disorder prediction 467 486 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 467 481 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 545 595 - -
Cmo17g00591 721 Pfam Plant protein of unknown function (DUF936) 4 701 IPR010341 -
Cmo17g00591 721 PANTHER EXPRESSED PROTEIN 1 720 IPR010341 -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 281 368 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 569 590 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 338 355 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 282 309 - -
Cmo17g00591 721 PANTHER DUF936 FAMILY PROTEIN 1 720 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 701 721 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 545 562 - -
Cmo17g00591 721 MobiDBLite consensus disorder prediction 122 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00591 - - - csv:101214568 1137.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00786 Cmo-Chr8:4959998 Cmo17g00591 Cmo-Chr17:6272311 1.29E-12 dispersed
Cmo11g00594 Cmo-Chr11:2861586 Cmo17g00591 Cmo-Chr17:6272311 5.27E-34 dispersed
Cmo12g00004 Cmo-Chr12:19993 Cmo17g00591 Cmo-Chr17:6272311 2.06E-12 dispersed
Cmo17g00591 Cmo-Chr17:6272311 Cmo17g00891 Cmo-Chr17:8091881 6.72E-32 dispersed
Cmo17g00591 Cmo-Chr17:6272311 Cmo08g00197 Cmo-Chr8:1154353 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1277 . . . . . Bpe14g01063 . . . Cmo17g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo02g00449 . Bda11g00478 Bda13g00251 . . Bma02g00967 . . . . . Cma17g00609 Car08g00175 Car17g00576 . Cpe17g01086 . . . . . . . . . . . . . . . . . Cme11g02453
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009199 1 1 2 1 2 1 2 0 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00591 Cmo_Chr17 FPKM 5.663202 5.782866 11.791279 13.539502 8.168582 6.826692 7.490248 10.151237 10.8957 12.686361