Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00616 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACATCATGACTTTCATTACACGAGTAATGGGAATGCATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCTGACCATGGCGACCTTGCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCTATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTTATGTGGGCAAACAAGCTGTGGTTGCCCTGGAATCTTCTCTTCTGCTACCTTAAAGGATCGTTGGAAGGATTTATGGTGTTCCTCATCCAACTCTTAGAGTCTCGGTGTAAGATCTTTGAATGGGCATCCTTATCTGCTTGCTCTCTGGTTTTCATTCAATCAGCTGGGCATATCAAGGATATGCCCTCCAGATCCACGTGGGACATTTCTGATTGTCGTCTCTTTGCTGATTGGGTCAATAAAGGCACCTATGGTGCTTCCTGGTTTAAACAATACTTGGTTCAAGTATCATGGGGTAGTAATCCTTTCAAAGGAAGATGCAAGATTTTAAGGAAAAATAAGTGTGGTCAGACGTCAGCATCCTATGCCCACGACTCTGAAAATGATATGCTGCATTTGCTTTCCGGCATAGAAATTCTTTTCTTGAAGGCTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCATCATTCAGTAGAAATGAGAATGTTGTGCAGAATGGAGACTCGGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTAGTCTAATGGCTAAGAATCAGGATTCACACCCGCGACAGAGAGGCCCTTATAGATTCTTTTCTGGCCAATTCATCTTGGAAACAAGGGTACCGTGCACGTGCACTAATTTTATTAGCTTTTCCTTCATATTCTGA 1551 43.71 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNALADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLWLPWNLLFCYLKGSLEGFMVFLIQLLESRCKIFEWASLSACSLVFIQSAGHIKDMPSRSTWDISDCRLFADWVNKGTYGASWFKQYLVQVSWGSNPFKGRCKILRKNKCGQTSASYAHDSENDMLHLLSGIEILFLKAVRELCGTSQKHQTRVDKLHHSVEMRMLCRMETRSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSLMAKNQDSHPRQRGPYRFFSGQFILETRVPCTCTNFISFSFIF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6496734 6503962 - CmoCh17G006160.1 Cmo17g00616 400999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00616 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 266 - -
Cmo17g00616 516 Pfam tify domain 84 112 IPR010399 -
Cmo17g00616 516 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cmo17g00616 516 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cmo17g00616 516 Gene3D - 219 266 IPR013088 GO:0006355|GO:0008270
Cmo17g00616 516 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cmo17g00616 516 CDD ZnF_GATA 231 265 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 SMART tify_2 78 113 IPR010399 -
Cmo17g00616 516 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmo17g00616 516 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cmo17g00616 516 SMART GATA_3 225 282 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00819 Cmo17g00616 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01455 Cmo-Chr11:10243116 Cmo17g00616 Cmo-Chr17:6496734 1.09E-62 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo19g00501 Cmo-Chr19:5952207 1.54E-55 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo08g00819 Cmo-Chr8:5200905 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11394 PF06203 CCT 1.80E-14 CL0281 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00616 - - cmo:103500623 513.842