Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00616 ATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAACCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAGCAGGAACATCATGACTTTCATTACACGAGTAATGGGAATGCATTGGCTGATGAGCATGAAAATGAAGGTCATGGCATTATGGTTGTGGAAAGGGAAGCTCCATCTGACCATGGCGACCTTGCTGAGAATCGTGGTGTAATGGTGGATCGTGGAGGTGATAACTGTGATCAACTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGACACTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTATTCGTGTTCCCTCTATACCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAACGTAATAAAGGCCAGTTCACATCCTCTAAACCAACTCATGAAGATTCATCATTGGCCATAACAAGTTGGGAATCAAATGAGAATTGGGCTACCGATGGAAATGGTTCCCAACAACAAGAAATTCTCTGCCGACATTGTGGCATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTTATGTGGGCAAACAAGCTGTGGTTGCCCTGGAATCTTCTCTTCTGCTACCTTAAAGGATCGTTGGAAGGATTTATGGTGTTCCTCATCCAACTCTTAGAGTCTCGGTGTAAGATCTTTGAATGGGCATCCTTATCTGCTTGCTCTCTGGTTTTCATTCAATCAGCTGGGCATATCAAGGATATGCCCTCCAGATCCACGTGGGACATTTCTGATTGTCGTCTCTTTGCTGATTGGGTCAATAAAGGCACCTATGGTGCTTCCTGGTTTAAACAATACTTGGTTCAAGTATCATGGGGTAGTAATCCTTTCAAAGGAAGATGCAAGATTTTAAGGAAAAATAAGTGTGGTCAGACGTCAGCATCCTATGCCCACGACTCTGAAAATGATATGCTGCATTTGCTTTCCGGCATAGAAATTCTTTTCTTGAAGGCTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCATCATTCAGTAGAAATGAGAATGTTGTGCAGAATGGAGACTCGGAGTCCAACCCAAAAGGTGCTTAGAATTGAGACAGATGTTTATGATTGCTGTTGCGGAAATTATACTGAGCTTAATCTCTCCTTACAGAGTAGTTTGAAACGGGTTAGTCTAATGGCTAAGAATCAGGATTCACACCCGCGACAGAGAGGCCCTTATAGATTCTTTTCTGGCCAATTCATCTTGGAAACAAGGGTACCGTGCACGTGCACTAATTTTATTAGCTTTTCCTTCATATTCTGA 1551 43.71 MDGIHASDGRMHMNHAQHSMHTQSVQEQEHHDFHYTSNGNALADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDTVSPEKVQAVLLLLGGREVPIRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPTHEDSSLAITSWESNENWATDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLWLPWNLLFCYLKGSLEGFMVFLIQLLESRCKIFEWASLSACSLVFIQSAGHIKDMPSRSTWDISDCRLFADWVNKGTYGASWFKQYLVQVSWGSNPFKGRCKILRKNKCGQTSASYAHDSENDMLHLLSGIEILFLKAVRELCGTSQKHQTRVDKLHHSVEMRMLCRMETRSPTQKVLRIETDVYDCCCGNYTELNLSLQSSLKRVSLMAKNQDSHPRQRGPYRFFSGQFILETRVPCTCTNFISFSFIF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6496734 6503962 - CmoCh17G006160.1 Cmo17g00616 400999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00616 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 266 - -
Cmo17g00616 516 Pfam tify domain 84 112 IPR010399 -
Cmo17g00616 516 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 IPR045280 GO:0006355
Cmo17g00616 516 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cmo17g00616 516 Gene3D - 219 266 IPR013088 GO:0006355|GO:0008270
Cmo17g00616 516 PANTHER GATA TRANSCRIPTION FACTOR 28 4 265 - -
Cmo17g00616 516 CDD ZnF_GATA 231 265 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 SMART tify_2 78 113 IPR010399 -
Cmo17g00616 516 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
Cmo17g00616 516 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmo17g00616 516 Pfam CCT motif 155 197 IPR010402 GO:0005515
Cmo17g00616 516 SMART GATA_3 225 282 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00616 - - - cmo:103500623 513.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00819 Cmo17g00616 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01455 Cmo-Chr11:10243116 Cmo17g00616 Cmo-Chr17:6496734 1.09E-62 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo19g00501 Cmo-Chr19:5952207 1.54E-55 dispersed
Cmo17g00616 Cmo-Chr17:6496734 Cmo08g00819 Cmo-Chr8:5200905 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo05g00563 CST 48 255 Tify Gene Family AT4G24470 56.9 7.8e-62 235.0
Cmo12g00161 CST 48 271 Tify Gene Family AT4G24470 53.1 1.4e-58 224.2
Cmo11g01455 . 89 302 Tify Gene Family AT4G24470 52.1 4.4e-49 192.6
Cmo19g00501 . 82 260 Tify Gene Family AT4G24470 59.2 2.4e-47 186.8
Cmo08g00819 CST 1 299 Tify Gene Family AT1G51600 56.6 5.0e-82 302.0
Cmo17g00616 CST 1 265 Tify Gene Family AT1G51600 59.3 1.0e-79 294.3
Cmo19g00501 . 79 280 Tify Gene Family AT1G51600 57.3 1.3e-53 207.6
Cmo11g01455 . 86 287 Tify Gene Family AT1G51600 57.1 6.3e-53 205.3
Cmo05g00561 . 71 246 Tify Gene Family AT1G51600 59.6 1.0e-50 198.0
Cmo05g00563 CST 72 250 Tify Gene Family AT1G51600 56.5 5.2e-47 185.7
Cmo12g00161 CST 371 544 Tify Gene Family AT1G51600 56.4 2.0e-46 183.7
Cmo17g00616 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cmo08g00819 CST 1 229 Tify Gene Family AT3G21175 55.5 4.4e-56 215.3
Cmo17g00201 CST 1 180 Tify Gene Family AT4G14713 52.1 4.7e-45 178.7
Cmo08g01098 CST 1 180 Tify Gene Family AT4G14713 52.1 1.4e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11394 PF06203 CCT 1.80E-14 CL0281 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00616 Cmo_Chr17 FPKM 0.0 0.0 3.113842 3.49888 29.373762 28.173639 31.181875 5.4699 4.243002 5.268578