Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00621 ATGGATGAGGCGGAAGCCATTAGGAAGCTTGTCGCAGCTAGGCAGCACTTGAAAACCAGCCTAGACAAGTCAAGAGACATTGCATCTGCACTAGCCAATGCTGGACCAAGATTGAGAGACAAGGCTCGAAGGCTAGCAAGTTTGGAAGCCGAGCTCGTTCCGATTCAGAAATGCAACTCTTTCGCTGTTGGAGACCAGATCGACCATGTCGTTGGACTTGCATCTGCACTTCTTAATGTTATCAACACTGTTTCTGAACTTCAGAAGTCACTCATGGCTGATTCTTGTTCTCAACTCTCCAGTTACCTCTCGGTCATGGAACGGTTCGAAAATGCATTTGAGTTTCTTTCTGATAACTGCAGCCTTATAATTCAGTGGTTGGAGGGAATTGTCCAATTTGTTGAAGACAACAGAATAGTCAATGATCAGCGACTACTCAATGTCAAAAACTCGTTGGAAAATCTTCGTGAGTTGCAGGTGGCCGAGAACAATGGTCGTATCGATGGAGGGCCTCTCAGTTTGGCATTGAACAAGCTTGAACTTGAGTTCAGGAGGTTACTAAGAGACCATAGTGTTTCTCTTCATCTAGCTCCAGCCCTATTGACCAGTGAAAACCAAGACTTCATTGGTTTCTCACTATTGCCAGAATCTATAGTTCAAAAACTGCAGTTGATTCTTACTAAACTGAAAGCCAACGACCGAATTGAAAACTGCATATCGATATACATCGAAATTCGAAGTTCAAATGCTGAACAAAGTTTAAGAACTCTTGGTTTGGATTATCTTGAGACGTCAGTCGATGAACTGAGCAATATGCAGAGCATTGAAGATCATATCAACAGATGGAGCAAGCATCTTGAGCTTGCTGTGAAGCATTTATATGAGCCTGAATGTAAGCTTTGCAATGACATATTCGAGAAGATCGAACCCGAAGTCAGGACCAAATGTTTTGCTAAGATTGCATCACAGTCTGGATTTCTCCCTCTCCTCCAATTTGGGAGGAAAGTCACCCAAACAAAGAAGGACCCCATCAAGCTCTTGAACCTACTGGACATTTTCTTGGTTCTAGACAACCTAAGAACAGACATTAACAAGCTGTTTGGTGGGAAAGCTTGCACGGAGATTCAAGCTACAACGAGGGATCTCGTAAAACATGTCGTAAACGGCATATGCGACGTTTTCTCGGAACTTCCAATCCAAGTTGAGTTGCAAAGACAGGGCTGTCCTCCAGTAGACGGTGGCATTCCAAGCTTGGTAAGCTTTGTCACTGATTACTGCAACAAGCTTCTTGGGAACCATTACAAACCAATCCTAAACCAGATTTTAATCATCCATCAAAGCTGGGAAAAGACATGTGAAGAAAACCTTCTAGAGAACCAAATTTATCTAATCATAAAAGAACTTGCTCTAAATCTAGATTCATGGGCAAAAGCCTACCAAGATATGTCAAAGTCCTACTACTTCATGATGAACAACCACTGCCATTTTAGCAATCTAAAAGGTTCAAAACTAGGCGAAATGATGGGAGATGAATGGTTAAACGCACACAACCAATACAAGGAATATTACGCAGCGCTTTACCTGAGAGAAAGCTGGGGAGAGCTTCTCAGCCTTCTAAATCAGAAGGGTCAGCTTCCATATGAAGGGGAGAAATCGAGAGATATTGATCTGTTGAAGAAAAGGGTAAAAATGTTCTCTCAGGCATTTGAACAAACACGTAAGAGGCAATCGAAATGGGTCATTTCAGATGAGGGTTTGAGAGAGAGAATTTGCCTGCTTTTAGTGCAGGCGATTGTGCCGGTTTATATGAAGAATTTCGAGGCTTTGATCGAACAGGATCGAGGCGCTGCTAAGTATTTGAAATACACTGCTGAGAGTATGGGGACTATGATCAGCTCTCTGTTTCGGCCAACGAACTGTCTCAAGGAGCCTTTGAAGACCGAAGTTCTCAGCCGCGAGAAGGTTCACTTTTCCATTTCCAAGTGGGCGGACGGCAAGCCCCAAAAGCCCATTCGGCTTCAATTGAGCCATCAGGTTTCCATGGCCGCCGCCAAGACCGCTCGGTCCAGAGGCACGCCTGTCAAGGAGACTGGCGCCAAGTTTGAGGAGGGTATCAGTTTCTTCAGGTCCGACAAATTTGATGCCGATTCCTATGTTCAAACTAGATGCTCTCTTAACGAGAAGGAAATTAAGCAATTATGCACTTATCTTTGGGATTTGAAGAAAGCTTCTGCTGAGGAGATGCGTAAAAGTGTCTATGCAAATTATGCTGCCTTTATACGCACATCAAAGGAGATATCAGATTTAGAGGTGGAGCTCTCGTCCATCAGAAACCTTCTGTCTACTCAGGCTGCTTTAATTCATGGTTTAGCTGAAGGGGTTCACATTGATTCTGTGTCCTCCTCTGCTTCTGAAAGCACAACTCCAAATGGCTTTCTAGGTTCAGGGGATGACAATCCTTCAGATATTGAGAAGTGGTTAGTGGAGTACCCTGATACTTTGGATGTTCTCTTAGCTGAACGAAGAGTTGATGAAGCTTTGGAAGCTCTTGATGAGGGAGAGAGGGTAGTTTCTGAGGCGAAAGAAAAGAAAACCTTGAGCCCAGCGGCAATTATGTCTCTTCAATCATCAATTGCTGAGCGGAGGCAAAGGTTAGCAGATCAGCTTGCTGAGGCTGCTTGTCAGCCTTCTACTCGTGGTGTCGAACTCCGTGCAGCCGTATCAGCACTCAAGAAATTAGGAGATGGACAGCGTGCTCACACTTTGTTACTAAAAGCACATCTCCAAAGATATCAGTACAATATGCAAAGCCTTCGGCCATCCAGCACTTCATATGGAGGAGCCTATACTGCTGCCCTCTCCCAGTTGGTTTTCTCAGCCATTGCTCAAGCTTCTAGTGATTCCTTGTCTATTTTTGGTAAAGAACTTGCTTATTCTTCTGAGCTAGTGGTGTGGGCTACAAAACAGACGGAGGCTTTTGCACTTCTTGTAAAAAGACACGCTTTAGCTTCATCTGCAGCTGCTGGAGGTCTCAGAGCTGCTGCAGAGTGTGTTCAAATTGCTTTAGGTCATTGTTCATTATTGGAAGGTCGTGGTTTGGCACTCTGTCCTGTGCTTGTAAAACTTTTCAGGCCTAGTGTTGAACAAGCACTTGAAGCCAATTTAAAAAGAATTGAAGAAAGCACAGCTGCCTTGGCTGCTGCTGATGATTGGGTACTAAGATATGCTCCGACAACAACATCCCAATCTGGCCGAACTTCTAGCACTGCTCTTAGTAATACTGCATTCCAACATAAATTGACTAGTAGTGCTCACCGCTTCAATTTTATGGTCCAGGATTTTTTTGAGGACGTGGGACCTTTACTTAGTATGCAACTAGGCAATCAAACTCTGGAGGGTTTATTCCAAGTGTTTGACTCTTATATCAATATGTTAATCAAAGCATTGCCTGGTATGGAAGAAGAAGCAAATTTTGATGGTGCGGGAAGTAAGATAGTGCGCTTAGCTGAAACAGAAGTTCAGCAAGTTGCTCTCTTGGCAAATGCATCATTGTTAGCATATGAACTATTGCCTCGTGCTGCCATGAAACTGTCCCTGCCAACTCAGACTGCTTATAAGGACGATCCTCGCCAGAGACTTTCAGACAAGCAAAACCGTCATCCAGAACAAAGGGAGTGGAAAAGGCGGCTAGTTGGCTCTGTGGATAGATTGAAAGATACTTTTTGTCGACAGCATGCCCTTGATCTGATTTTTACAGAGGATGGAGACAGCCATCTCACTGCTGAGATGTACCTGAACATGGGTGGAAATATGGATGAAGTTGAATGGTTCCCATCTCTTATATTCCAGGAACTGTTTGTAAAACTGAGCAGAATGGCTAGTATGGCAGCAGATATGTTTGTTGGCAGGGAAAGATTTGCTACATTACTATTGATGAGGCTCACAGAAACTGTCATCTTGTGGCTTTCGGGGGACCAAAGTTTTTGGGACGATATTGAGGAAGGCCCAAGGCCTCTAGGACCTCTGGGTCTTCAACAGTTGTACTTGGATATGAAGTTCGTCATGTGTTTTGCTTCCCAAGGTCGATACTTATCTCGGAATCTACACAGAGTTGTCAATGAGATCATTTCAAAAGCAATGGCTGCGTTTGCTGCAACAGGAATGGATCCAGATAGTGTACTACCGGAAGATGAATGGTTCAATGATGTTTGTCAAGATGCAATGGAAAGATTAAGTGGAAGGCCGAAGGCCATAAATGGGGACAGGGATCCTAATAGCCCAACAGCCTCAGTTTCAGCCCAGTCGATATCTTCTGTTAGATCTCATGGGAGTTCTTGA 4338 43.98 MDEAEAIRKLVAARQHLKTSLDKSRDIASALANAGPRLRDKARRLASLEAELVPIQKCNSFAVGDQIDHVVGLASALLNVINTVSELQKSLMADSCSQLSSYLSVMERFENAFEFLSDNCSLIIQWLEGIVQFVEDNRIVNDQRLLNVKNSLENLRELQVAENNGRIDGGPLSLALNKLELEFRRLLRDHSVSLHLAPALLTSENQDFIGFSLLPESIVQKLQLILTKLKANDRIENCISIYIEIRSSNAEQSLRTLGLDYLETSVDELSNMQSIEDHINRWSKHLELAVKHLYEPECKLCNDIFEKIEPEVRTKCFAKIASQSGFLPLLQFGRKVTQTKKDPIKLLNLLDIFLVLDNLRTDINKLFGGKACTEIQATTRDLVKHVVNGICDVFSELPIQVELQRQGCPPVDGGIPSLVSFVTDYCNKLLGNHYKPILNQILIIHQSWEKTCEENLLENQIYLIIKELALNLDSWAKAYQDMSKSYYFMMNNHCHFSNLKGSKLGEMMGDEWLNAHNQYKEYYAALYLRESWGELLSLLNQKGQLPYEGEKSRDIDLLKKRVKMFSQAFEQTRKRQSKWVISDEGLRERICLLLVQAIVPVYMKNFEALIEQDRGAAKYLKYTAESMGTMISSLFRPTNCLKEPLKTEVLSREKVHFSISKWADGKPQKPIRLQLSHQVSMAAAKTARSRGTPVKETGAKFEEGISFFRSDKFDADSYVQTRCSLNEKEIKQLCTYLWDLKKASAEEMRKSVYANYAAFIRTSKEISDLEVELSSIRNLLSTQAALIHGLAEGVHIDSVSSSASESTTPNGFLGSGDDNPSDIEKWLVEYPDTLDVLLAERRVDEALEALDEGERVVSEAKEKKTLSPAAIMSLQSSIAERRQRLADQLAEAACQPSTRGVELRAAVSALKKLGDGQRAHTLLLKAHLQRYQYNMQSLRPSSTSYGGAYTAALSQLVFSAIAQASSDSLSIFGKELAYSSELVVWATKQTEAFALLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEGRGLALCPVLVKLFRPSVEQALEANLKRIEESTAALAAADDWVLRYAPTTTSQSGRTSSTALSNTAFQHKLTSSAHRFNFMVQDFFEDVGPLLSMQLGNQTLEGLFQVFDSYINMLIKALPGMEEEANFDGAGSKIVRLAETEVQQVALLANASLLAYELLPRAAMKLSLPTQTAYKDDPRQRLSDKQNRHPEQREWKRRLVGSVDRLKDTFCRQHALDLIFTEDGDSHLTAEMYLNMGGNMDEVEWFPSLIFQELFVKLSRMASMAADMFVGRERFATLLLMRLTETVILWLSGDQSFWDDIEEGPRPLGPLGLQQLYLDMKFVMCFASQGRYLSRNLHRVVNEIISKAMAAFAATGMDPDSVLPEDEWFNDVCQDAMERLSGRPKAINGDRDPNSPTASVSAQSISSVRSHGSS 1445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6530930 6543243 + CmoCh17G006210.1 Cmo17g00621 401004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00621 1445 SUPERFAMILY Cullin repeat-like 77 635 IPR016159 -
Cmo17g00621 1445 PANTHER EXOCYST COMPLEX COMPONENT 8 695 1440 IPR033961 GO:0000145|GO:0006887
Cmo17g00621 1445 Gene3D ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrial 640 674 IPR036742 GO:0000275|GO:0015986|GO:0046933
Cmo17g00621 1445 Pfam Exo70 exocyst complex subunit 281 632 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cmo17g00621 1445 Coils Coil 843 863 - -
Cmo17g00621 1445 MobiDBLite consensus disorder prediction 1423 1445 - -
Cmo17g00621 1445 Pfam Vps51/Vps67 708 787 - -
Cmo17g00621 1445 Gene3D Exocyst complex component Exo70 136 639 - -
Cmo17g00621 1445 Pfam Exocyst component 84 C-terminal 825 1034 IPR032403 -
Cmo17g00621 1445 Gene3D - 946 1050 IPR042560 -
Cmo17g00621 1445 Gene3D - 821 933 IPR042561 -
Cmo17g00621 1445 MobiDBLite consensus disorder prediction 1411 1445 - -
Cmo17g00621 1445 SUPERFAMILY Cullin repeat-like 818 1051 IPR016159 -
Cmo17g00621 1445 PANTHER EXOCYST COMPLEX COMPONENT EXO84A 695 1440 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01223 Cmo17g00621 CCT
Cmo14g01223 Cmo17g00621 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00650 Cmo-Chr5:3281102 Cmo17g00621 Cmo-Chr17:6530930 0 dispersed
Cmo12g00250 Cmo-Chr12:1623698 Cmo17g00621 Cmo-Chr17:6530930 0 dispersed
Cmo17g00621 Cmo-Chr17:6530930 Cmo04g01515 Cmo-Chr4:7747077 4.17E-56 dispersed
Cmo05g00966 Cmo-Chr5:7768074 Cmo17g00621 Cmo-Chr17:6530930 0 transposed
Cmo08g00812 Cmo-Chr8:5140656 Cmo17g00621 Cmo-Chr17:6530930 7.37E-17 transposed
Cmo13g00464 Cmo-Chr13:5680860 Cmo17g00621 Cmo-Chr17:6530930 2.76E-108 transposed
Cmo17g00621 Cmo-Chr17:6530930 Cmo08g00811 Cmo-Chr8:5134827 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00621 K19986 - csv:101213590 1370.14