Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00626 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGCCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGCCTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAATCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTTCTGCACCCCCTCCCCCACCTGGTACTCCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGACGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCACTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGGTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGGTGCAAGTTCAGGATACACTGCCCCTGAGGTCACCATGTCCGGCCAATATACGTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGACTATATCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 2145 45.64 MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPPQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLMPSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGSAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDGASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6571058 6577437 + CmoCh17G006260.1 Cmo17g00626 401009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00626 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cmo17g00626 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Cmo17g00626 714 SUPERFAMILY L domain-like 28 234 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 260 281 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 692 714 - -
Cmo17g00626 714 CDD STKc_IRAK 415 684 - -
Cmo17g00626 714 Gene3D Ribonuclease Inhibitor 175 247 IPR032675 -
Cmo17g00626 714 Pfam Leucine Rich repeat 97 114 IPR001611 GO:0005515
Cmo17g00626 714 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cmo17g00626 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 239 283 - -
Cmo17g00626 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cmo17g00626 714 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Cmo17g00626 714 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cmo17g00626 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Cmo17g00626 714 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Cmo17g00626 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00626 714 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00626 - - - csv:101213107 1189.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g00024 Cmo17g00626 CCT
Cmo08g00808 Cmo17g00626 CST
Cmo08g00578 Cmo17g00626 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00024 Cmo-Chr1:83641 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo15g01506 Cmo-Chr15:10197461 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo17g00626 Cmo-Chr17:6571058 Cmo18g00544 Cmo-Chr18:4215426 0 dispersed
Cmo14g01254 Cmo-Chr14:10564460 Cmo17g00626 Cmo-Chr17:6571058 0 wgd
Cmo17g00626 Cmo-Chr17:6571058 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g7 Blo05g00016 . . . . . . Bma13g01189 Cmo08g00808 Cmo17g00626 Cma01g00022 . Car01g00018 Car14g01082 . Cpe12g00545 Cpe17g00420 Bhi01g02818 . . . . . . . . . . . . . . Cone17ag0031 . . Lsi02g02850 Csa07g02300 . Cme01g02755 . Blo10g00947 . . . Bpe09g00053 Bma09g01001 . . Cmo01g00024 . Cma08g00837 Cma17g00644 Car08g00721 Car17g00608 Cpe02g01752 . Bhi09g00253 . . . . . . Cla09g00135 . . . . . . . Csa03g02807 Chy01g02121 .
Vvi9g912 . Blo06g00642 . . . . Bma10g00705 Bma13g00656 Cmo08g00578 Cmo17g00626 . . . . . Cpe12g00545 Cpe17g00420 . . . . . . . . . . . . . . . . . . Lsi02g02849 Csa07g02298 . Cme01g02547 . Blo10g00501 . Bda12g00560 . Bpe09g00456 . . Sed14g0708 . . . Cma17g00644 . Car17g00606 . . Bhi09g00536 Tan06g0478 Cmetu08g0001 . Hepe03g1671 . . . . . . . . . . . Chy01g02120 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo18g00544 . 384 677 Strubbelig Receptor Gene Family AT1G11130 54.1 7.6e-86 315.8
Cmo13g00445 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.9e-85 313.2
Cmo17g00626 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.1e-83 307.8
Cmo14g00436 . 17 725 Strubbelig Receptor Gene Family AT5G06820 52.8 4.4e-177 619.0
Cmo19g01004 CST 34 786 Strubbelig Receptor Gene Family AT4G03390 61.0 2.0e-204 709.9
Cmo11g01937 CST 30 725 Strubbelig Receptor Gene Family AT4G03390 56.9 7.7e-188 654.8
Cmo03g00498 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.4 3.0e-155 546.6
Cmo17g00626 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.8 7.9e-92 335.9
Cmo08g00808 CCT,CST 439 777 Strubbelig Receptor Gene Family AT4G03390 51.8 4.5e-87 320.1
Cmo04g01041 . 67 711 Strubbelig Receptor Gene Family AT3G13065 53.4 2.2e-138 490.3
Cmo15g01506 . 20 673 Strubbelig Receptor Gene Family AT3G13065 53.0 8.8e-135 478.4
Cmo17g00626 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 7.0e-100 362.5
Cmo04g01041 . 67 733 Strubbelig Receptor Gene Family AT1G78980 60.7 1.4e-185 647.1
Cmo15g01506 . 22 677 Strubbelig Receptor Gene Family AT1G78980 55.9 5.5e-169 592.0
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G78980 51.3 4.4e-150 529.3
Cmo01g00024 CCT 30 717 Strubbelig Receptor Gene Family AT1G78980 51.7 3.2e-148 523.1
Cmo01g00024 CCT 1 710 Strubbelig Receptor Gene Family AT1G53730 61.6 3.5e-211 732.3
Cmo14g01254 . 17 713 Strubbelig Receptor Gene Family AT1G53730 60.3 1.5e-201 700.3
Cmo17g00626 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.6 2.2e-176 616.7
Cmo08g00808 CCT,CST 33 788 Strubbelig Receptor Gene Family AT1G53730 54.3 1.0e-173 607.8
Cmo01g00024 CCT 11 714 Strubbelig Receptor Gene Family AT3G14350 51.3 4.8e-181 632.1
Cmo17g00626 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 52.9 2.6e-155 546.6
Cmo08g00808 CCT,CST 42 786 Strubbelig Receptor Gene Family AT3G14350 50.9 2.7e-152 536.6
Cmo18g00544 . 332 707 Strubbelig Receptor Gene Family AT4G22130 82.2 8.4e-176 614.4
Cmo13g00445 . 344 711 Strubbelig Receptor Gene Family AT4G22130 79.9 7.6e-169 591.3
Cmo01g00024 CCT 404 726 Strubbelig Receptor Gene Family AT4G22130 63.4 2.1e-118 423.7
Cmo14g01254 . 389 720 Strubbelig Receptor Gene Family AT4G22130 62.5 1.4e-117 421.0
Cmo17g00626 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.6 3.0e-117 419.9
Cmo08g00808 CCT,CST 446 790 Strubbelig Receptor Gene Family AT4G22130 60.0 5.0e-112 402.5
Cmo11g01937 CST 393 717 Strubbelig Receptor Gene Family AT4G22130 56.8 1.8e-106 384.0
Cmo19g01004 CST 483 778 Strubbelig Receptor Gene Family AT4G22130 60.6 4.5e-105 379.4
Cmo04g01041 . 416 733 Strubbelig Receptor Gene Family AT4G22130 55.7 6.8e-101 365.5
Cmo03g00498 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.1 9.2e-98 355.1
Cmo15g01506 . 364 677 Strubbelig Receptor Gene Family AT4G22130 56.4 1.7e-96 350.9
Cmo14g00436 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 1.2e-92 338.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75008 PF07714 PK_Tyr_Ser-Thr 2.70E-43 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00626 Cmo_Chr17 FPKM 11.158456 10.494036 3.15847 2.550222 22.337303 18.556295 21.368977 2.280978 2.52274 2.259167