Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00631 ATGGAACAACCCATCGCCGCCGGAATCTCAAGTTCCGGCAACCACCTCCCAAAGCCGAAGAACAATAGAAAGAAGCTCATAATCCTAGCCGTGTCTTCAACCCTCCTTCTGGTGGGCATCGTCGCCGGAGTGGTGAGCTCGAGAAACGGCGGCGGAGAGGAGGCTAAAAGCCATGCCATTGTGAAGAGCACGTGTAGCAGCACGTTGTATCCGGATCTGTGCTTTTCGAGCATTTTGAAGAGCGATGGGGCGATGAAGAGAGTTGGTAGTAAAAAGGATGTGATCGAGGTGTCGATTAATATTACGGTTAAAGCGGTGGAGGAGAATTATTTTAAGGTGTTGAAATTGTATGAGTTGAAGAATATTAGTCACAGGGAGAAGATTGCTCTTCATGATTGCCTTGAAACCATTGATGAGACGCTTGATGAGCTTCATAAGGCTACTGTTGACCTCCATGAATACCCGAATAAGAAGTCTCTTAATCAACATGCTGATGATCTCAAGACCTTGCTTAGTTCCGCTATTACTAATCAGGAGACATGCCTCGACGGGTTTTCCCACGACGAGGCGGACAAGAACCTGCGGGACAAGCTAAAAGAGGGTCAAATAGAGGTAGAGCGCATGTGCAGCAATGCGCTAGCCATGATTAAGAACATGACCGATACAGACATAGCCAACTACGAGGCCAAAATGGGAACAACAGCCAACAGAAAGCTCAAGGAAGAGATCAACGACGAGCAAATCCAGTGGCCGGAGTGGCTGTCAGCCGGAGACCGACGTCTGCTGCAATCCTCCTCCGTGAAGCCGGACGTGGTCGTGGCGGCGGATGGCAGCGGGAACTTCAAGACAGTGGCGGCCGCCGTCGCCGCCGCCCCGGTAAAAAGTAGCAAGAGATTTGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTAGATGTGCCAAAGAAGAAGACGAATATAATGTTCATGGGAGATGGAAGAAGTAACACTATAATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCCACCGTCGCTGCGGTGGGAGAAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCCTCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCATTCCAACCGTCAGTTCTACATCAACTGTCTCATTTCCGGCACCGTCGATTTCATCTTCGGCAACGCCGCTGCCGTTTTCCAAGACTGTGACATTCACGCGCGTAGACCAAACTCGGGTCAGAAAAACATGGTCACGGCTCAGGGTCGGTCCGACCCAAACCAGAACACCGGAATCGTTATCCAGAAATCCCGAATCGGAGCCACCTCCGATCTCCGGTCGGTCCAGAAGAGCTTCCCGACGTTCCTCGGAAGACCGTGGAAGGAATATTCTAGAACCGTGATCATGCAGTCGTCGATAAGTGACGTCATTGACTCGAAGGGATGGCATGAATGGAGCGGTAATTTTGCTCTCAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGTGCTTCGACGAGCGGGAGGGTGACGTGGAAGGGGTTCAGGGTAATTCGGAGTGCCACGGAGGCTGAAGGTTTCACTCCTGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGGGCGACTGGGTTTCCTTTCTCTTTGGGACTATGA 1746 51.03 MEQPIAAGISSSGNHLPKPKNNRKKLIILAVSSTLLLVGIVAGVVSSRNGGGEEAKSHAIVKSTCSSTLYPDLCFSSILKSDGAMKRVGSKKDVIEVSINITVKAVEENYFKVLKLYELKNISHREKIALHDCLETIDETLDELHKATVDLHEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDEADKNLRDKLKEGQIEVERMCSNALAMIKNMTDTDIANYEAKMGTTANRKLKEEINDEQIQWPEWLSAGDRRLLQSSSVKPDVVVAADGSGNFKTVAAAVAAAPVKSSKRFVIRIKAGVYRENVDVPKKKTNIMFMGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARRPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRSVQKSFPTFLGRPWKEYSRTVIMQSSISDVIDSKGWHEWSGNFALNTLFYGEYQNTGPGASTSGRVTWKGFRVIRSATEAEGFTPGKFIGGGSWLRATGFPFSLGL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6599797 6602710 + CmoCh17G006310.1 Cmo17g00631 401014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00631 581 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Cmo17g00631 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 220 IPR035513 -
Cmo17g00631 581 Pfam Pectinesterase 270 566 IPR000070 GO:0030599|GO:0042545
Cmo17g00631 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 220 IPR035513 -
Cmo17g00631 581 Pfam Plant invertase/pectin methylesterase inhibitor 60 215 IPR006501 GO:0004857
Cmo17g00631 581 PANTHER PECTINESTERASE 25 580 - -
Cmo17g00631 581 SMART PMEI_2 56 215 IPR006501 GO:0004857
Cmo17g00631 581 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Cmo17g00631 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 219 IPR006501 GO:0004857
Cmo17g00631 581 Gene3D - 263 581 IPR012334 -
Cmo17g00631 581 SUPERFAMILY Pectin lyase-like 266 580 IPR011050 -
Cmo17g00631 581 CDD PMEI-like_3 63 220 - -
Cmo17g00631 581 PANTHER PECTINESTERASE 25 580 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00631 Cmo-Chr17:6599797 Cmo17g01039 Cmo-Chr17:8822967 5.43E-171 dispersed
Cmo18g01346 Cmo-Chr18:12739181 Cmo17g00631 Cmo-Chr17:6599797 1.04E-144 dispersed
Cmo14g01249 Cmo-Chr14:10538568 Cmo17g00631 Cmo-Chr17:6599797 0 transposed
Cmo14g01248 Cmo-Chr14:10533283 Cmo17g00631 Cmo-Chr17:6599797 5.14E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00631 K01051 - csv:101212388 984.556