Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00636 ATGGTGTTTCATTCTCAAGTTCCTTCAAGATATACTTGTAGGCTTCTTGCAATCCCCTGTCGGAGTGTTCCTGAAGATAAATTTAAGAAGGATAATCCAGATGATGAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGCCCAATCCTAGTAAAGATGAGTTTTGTAGGATTATTGAATCGTATAGACCGAGCATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGAAGGTGTTGATTTGTTCACCGTAGAAGCGATTAGTGGGCTCTTTAGTTCTCCGTTGCCCACCACTGTATATTTGGAAGTAGCCAATGGAGATGAAGTAGCTGATGCACTTCATTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACATTTTCTTGTTATGCAGCATGCCATTTCCGTAATGCATTTCTTTCGGTTCTTCAGAGTTCATCTGCTCATACATGGGACGCATTTCAACTTGCACATGCTTCATTTAGGATGTATTGCTTGGGAAACAGCCTTGTTCTTCCTAACAGTAGTCATAATGACGTTAGTGAAGATCTAGGACCACATCTTCTAGGAGAACGTTTGAGAATAAACATTGAACCCCTTGAGAAAGAGGCAGCTGATGATGAAGAAAGTTCATCGGAAGTTCCTTCTGTTAGCATACTTGATCATGATGTTGAAATGAGATTTCTCATATGTGGTGAACCAAGGTCATTGGATGCTTACGTATTAGGAGCTCTGGAGGATGGTCTTAACGCTCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTCCAGGCAGGAATGCACTCTAATGGTGTTGTGACCATGCGCTGTGACATATCAACATGCAGTTTTGCCCACATCTCACTATTGGTGTCGGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACCAGTACAGACACTAATAGATGGTGATGGAAGCAAACACTCGCGTGAGCCACGGAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTCGAAGTTAGCATGAAGGTCCCTTCGTGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTTGTACTTGGCATTGCCGGCATTCAGGGTTTGTCTGTAGCTTCTTTTGAGAAGGACGATGCTGAACGCCTCATTTTCTTTGGTTCAAGGAAGCAAAGAGATTTATTTCTAAACAATTTAACCGATAGCACACCTCCAAGCTGGTTGAAACCACCTGCACCTAGAAAGAGATTGAGAAACGTGAAAGACATAAGCCTTGGTTCTCATGATGTTATTCAACATCTGAAGGTTTTGTCTGGTAACAGAATAGACGGCGAGAACATGGAAATAGGATCGAGGAATGGTTTCAGCACTCCCATGTTTCCACTCCCGAGAAGGAGAGGAATGAAAATTGCCGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGGGCACAATGGAGGCCTGTTTAAAGCTAGTGTTTCTTCTAGTAATTCAGGGAAGCATGTTACTGTAGGTTCAGCTTCAGTTTTGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTCTTGCTCTTCGAGGTCATAATCGACTTATTCCTCCTGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTCGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGTATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTATGAAACTTATCTTCTCGAGTATGAATTGGCGCATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACCGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTACAAGAAGAAGAAAGTTGGTAATGGGTTGTCTCCAGGCTTATCCTCAAGACCAATATGA 2346 42.71 MVFHSQVPSRYTCRLLAIPCRSVPEDKFKKDNPDDEQRYPFPQLNSSGRLEVQVLPNPSKDEFCRIIESYRPSIVYLQGEQLENDEVGSLVWEGVDLFTVEAISGLFSSPLPTTVYLEVANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNSLVLPNSSHNDVSEDLGPHLLGERLRINIEPLEKEAADDEESSSEVPSVSILDHDVEMRFLICGEPRSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGMHSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSEPVQTLIDGDGSKHSREPRKSASVACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVVLGIAGIQGLSVASFEKDDAERLIFFGSRKQRDLFLNNLTDSTPPSWLKPPAPRKRLRNVKDISLGSHDVIQHLKVLSGNRIDGENMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGGHNGGLFKASVSSSNSGKHVTVGSASVLQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEEEFLKDLLQFLALRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVGNGLSPGLSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6639372 6646464 + CmoCh17G006360.1 Cmo17g00636 401019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00636 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 - -
Cmo17g00636 781 SMART bright_3 598 702 IPR001606 GO:0003677
Cmo17g00636 781 Gene3D - 595 700 IPR036431 GO:0003677
Cmo17g00636 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Cmo17g00636 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Cmo17g00636 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
Cmo17g00636 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Cmo17g00636 781 CDD ARID 600 697 - -
Cmo17g00636 781 CDD PHD_ARID4_like 707 758 - -
Cmo17g00636 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Cmo17g00636 781 SMART ARID_2 594 697 - -
Cmo17g00636 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 768 IPR042293 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00019 Cmo17g00636 CCT
Cmo01g00019 Cmo17g00636 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00019 Cmo-Chr1:63358 Cmo17g00636 Cmo-Chr17:6639372 0 dispersed
Cmo14g01244 Cmo-Chr14:10511944 Cmo17g00636 Cmo-Chr17:6639372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11395 PF01388 ARID 2.50E-15 CL0123 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00636 - - csv:101214243 1407.12