Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00678 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTCGAAGATGTTTTCAGTGATTTTAGGGGCCGAAGAAACGGCGTCATCAAAGCTCTCACCGTAGATGTTGAAGAATTCTATCAACAATGTGATCCTGATAAGGAAAATCTATGCCTGTATGGATTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCAGAAGAAGTTCCTCCAGAACTTCCAGAGCCGGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGTGACTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTCAATATGATCAATGATTTGCCCACTGTATTTGAAGTAGTTACAGGTCTTGCGAAGAAACAAGTCAAGGAAAAGGCATCAAGTGCGAATGGTAGCAAATCCAAGTCGAGCCTTAAAACGAGGGAAACTGAAACGCAAGGAGTGTATGTGAGGCAGCCGCTGGCAAGGGAAGACGTAGAGGCGTTGTACGAAGAAGACGAAGATGAGCACGGCGACACCTTGTGTGGGGCGTGTGGTGAGAATTATGCAACAGATGAGTTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGAAAGTGTGTTAGAATAACTCCTGCAAAAGCCGTGCACATTAATCAGTACAAATGCCCATCCTGCAGCAGCAAAAGAAGCCGCATTTAA 756 44.84 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPDKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGLAKKQVKEKASSANGSKSKSSLKTRETETQGVYVRQPLAREDVEALYEEDEDEHGDTLCGACGENYATDEFWICCDICEKWFHGKCVRITPAKAVHINQYKCPSCSSKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6938430 6941266 + CmoCh17G006780.1 Cmo17g00678 401061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00678 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmo17g00678 251 Pfam PHD-finger 198 246 IPR019787 -
Cmo17g00678 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 250 - -
Cmo17g00678 251 SMART PHD_3 197 245 IPR001965 -
Cmo17g00678 251 MobiDBLite consensus disorder prediction 148 167 - -
Cmo17g00678 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmo17g00678 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Cmo17g00678 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cmo17g00678 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmo17g00678 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cmo17g00678 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00755 Cmo17g00678 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01413 Cmo-Chr5:10858557 Cmo17g00678 Cmo-Chr17:6938430 5.04E-125 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo17g00678 Cmo-Chr17:6938430 3.11E-127 dispersed
Cmo14g00058 Cmo-Chr14:290148 Cmo17g00678 Cmo-Chr17:6938430 1.06E-99 dispersed
Cmo16g00814 Cmo-Chr16:4208228 Cmo17g00678 Cmo-Chr17:6938430 2.13E-77 dispersed
Cmo17g00678 Cmo-Chr17:6938430 Cmo08g00755 Cmo-Chr8:4772591 1.41E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11400 PF12165 Alfin 7.50E-68 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00678 - - csv:101222322 488.804