Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00679 ATGAATTTAGGAGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCCAAATTCTTCTTCCTCGGTGCGGCGTTGTTTTCAGGTGTTTCTGCGTCTCTTTACCCTATGGTAGTGTTGAAAACTCGACAACAGGTCGCTCATTCGCAGCTTTCTTGCATCAGAACCGCCTTCCACCTTGTCCGGCACGAAGGTTTCCGAGCTCTCTACCGTGGATTTGGGACTTCTCTGATGGGGACTATCCCGGCTAGGGCTCTGTACATGGGAGCTCTTGAGTTTACTAAGAGCTATGTAGGGACTGCCACTGTTAGAGTCGGATTTCCAGAGGCCACTGCCGCTACCATTGCTAATGCAGCTGCTGGATTGAGTGCTGCAATGGCTGCTCAGCTTGTGTGGACTCCTGTTGATGTTGTGAGTCAGAGACTCATGGTTCAAACTCATTTCAACAATCCTAATCCTTCCTCGACTCGTTACATTAATGGAGTCGATGCATTCCGTAAGATCCTCAATGCCGATGGTATCCGAGGCTTGTATCGAGGTTTCGGGATATCGATTTTGACATATGCACCGTCGAATGCAGTGTGGTGGGCTTCTTATTATGTAGCACAGCGGTTAGTATGGGGCGGAATTGGATGCTATTACTCAAAGAAGCTTGATGAAGGCAATGAAAATGGAGGTTCAATCGTTTACAGACCGGATTCCAAGACGGTGATCGCAGTACAGGGCGCGAGCGCAGCCATGGCAGGGAGTATCTCAGCTCTGATAACAATGCCCCTCGATACAATCAAGACGAGATTGCAAGTTTTGGATGGGGATGAGAATGGTAGACGAGGGCCAACAATTGGACAGACATTGAGAAATCTGGTGAGGGAAGGCGGGTGGACGGCGTGCTACCGAGGGTTGGCGCCGCGATGCGCGTCGATGTCGATGTCTGCAACGACAATGATCACTACATATGAGTTCTTGAAACGGCTATCAACCAAGAATCGAGAGGGATTAACAAGCTGA 1041 49.57 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLSCIRTAFHLVRHEGFRALYRGFGTSLMGTIPARALYMGALEFTKSYVGTATVRVGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQTHFNNPNPSSTRYINGVDAFRKILNADGIRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCYYSKKLDEGNENGGSIVYRPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNREGLTS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6942765 6943805 - CmoCh17G006790.1 Cmo17g00679 401062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00679 346 SUPERFAMILY Mitochondrial carrier 23 333 IPR023395 -
Cmo17g00679 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cmo17g00679 346 Pfam Mitochondrial carrier protein 251 340 IPR018108 -
Cmo17g00679 346 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cmo17g00679 346 Pfam Mitochondrial carrier protein 126 217 IPR018108 -
Cmo17g00679 346 Gene3D Mitochondrial carrier domain 30 344 IPR023395 -
Cmo17g00679 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 216 IPR018108 -
Cmo17g00679 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 342 - -
Cmo17g00679 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 247 336 IPR018108 -
Cmo17g00679 346 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cmo17g00679 346 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cmo17g00679 346 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g00356 Cmo-Chr9:1537744 Cmo17g00679 Cmo-Chr17:6942765 7.42E-159 dispersed
Cmo15g00236 Cmo-Chr15:1176543 Cmo17g00679 Cmo-Chr17:6942765 4.19E-82 dispersed
Cmo17g00679 Cmo-Chr17:6942765 Cmo02g00600 Cmo-Chr2:3678691 7.11E-24 dispersed
Cmo17g00679 Cmo-Chr17:6942765 Cmo08g00754 Cmo-Chr8:4770418 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00679 K15121 - csv:101210602 598.586