Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00686 ATGCTTTCAGCCAATGGAGCGCCACATGCTAAAGCAGCAGCTGCTTGGCTTCATCAACCTGCAAAATTTATCAGAGAAGGCGACTCAGTCCATTTGAATTTTGTTTCGCCTACGCCCTCCTGTGCACACGCCTTAGGTGGGGCCGATCCCGTGACTAAGATAGTTGCGCCAGAGGTCGCGCAGCAGCTTCCCGAGGAGCCTCTTGCGGATCATCAGTCTAAGGGTTACTACAAAAACCTAACACCCTCCCATTTTGTTTCCCTCTTTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAGGAGTTTGGCAAACCCTAGCGCCCTTTCTTCAATCTCCTTCTGCTTCAACTTCCTCTCTGTTCTTGTCGATCCGCAGTGTTCCCTTTCTGTAGTGATCTCTTATATTTTGCACCATTCTCCACTTACAGCCATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGTCAATATGATACTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAACCTCCTTAGAGGCATTTATGCCTATGGTTTCGAGAAGCCATCTGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTTTGCTCTGGAATATTGCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCTTTGGTTTTGGCTCCGACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTCGGTGTTAAGGTACATGCTTGTGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAATCTCTTCGTCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATTTATGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTTTTCTCAGCCACAATGCCACCCGAAGCTTTGGAGATCACTAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTTGACAAGGAAGATTGGAAACTTGAAACGTTATGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCGGCCACCCACGGTGACATGGACCAGAACACTCGGGATATAATCATGCGTGAATTTCGGTCTGGCTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGAGGTATTGATGTTCAGCAAGTCTCCCTTGTTATAAATTATGATTTGCCAACCCAACCAGAGAATTACCTTCATCGAATTGGTCGAAGTGGGCGTTTCGGAAGAAAAGGTGTGGCCATTAATTTTGTTACAAGCGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCGTTGAGGAGCTGCCAGCCAATGTTGCTGATCTCCTATGA 1689 45.29 MLSANGAPHAKAAAAWLHQPAKFIREGDSVHLNFVSPTPSCAHALGGADPVTKIVAPEVAQQLPEEPLADHQSKGYYKNLTPSHFVSLFRCALPNTRLQLHGSDPRSLANPSALSSISFCFNFLSVLVDPQCSLSVVISYILHHSPLTAMAGLAPEGSQFDSRQYDTKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTSDDERMLFDIQKFYNVVVEELPANVADLL 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7014859 7019131 + CmoCh17G006860.1 Cmo17g00686 401069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00686 562 Pfam DEAD/DEAH box helicase 214 375 IPR011545 GO:0003676|GO:0005524
Cmo17g00686 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 543 IPR027417 -
Cmo17g00686 562 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 336 344 IPR000629 -
Cmo17g00686 562 Gene3D - 398 562 IPR027417 -
Cmo17g00686 562 SMART helicmild6 442 523 IPR001650 -
Cmo17g00686 562 CDD SF2_C_DEAD 402 532 - -
Cmo17g00686 562 SMART ultradead3 208 405 IPR014001 -
Cmo17g00686 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 189 217 IPR014014 GO:0003724
Cmo17g00686 562 PANTHER EUKARYOTIC INITIATION FACTOR 4A-11 171 562 - -
Cmo17g00686 562 PANTHER RNA HELICASE 171 562 - -
Cmo17g00686 562 Gene3D - 179 397 IPR027417 -
Cmo17g00686 562 Pfam Helicase conserved C-terminal domain 415 523 IPR001650 -
Cmo17g00686 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 562 IPR001650 -
Cmo17g00686 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 220 390 IPR014001 -
Cmo17g00686 562 CDD DEADc_EIF4A 194 391 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00440 Cmo-Chr5:2056656 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo08g00750 Cmo-Chr8:4741661 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo14g00989 Cmo-Chr14:5325450 Cmo17g00686 Cmo-Chr17:7014859 0 dispersed
Cmo14g02087 Cmo-Chr14:15169170 Cmo17g00686 Cmo-Chr17:7014859 6.99E-88 dispersed
Cmo17g00686 Cmo-Chr17:7014859 Cmo01g00266 Cmo-Chr1:1210950 2.17E-156 dispersed
Cmo01g00057 Cmo-Chr1:200325 Cmo17g00686 Cmo-Chr17:7014859 0 wgd
Cmo14g01286 Cmo-Chr14:10771250 Cmo17g00686 Cmo-Chr17:7014859 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00686 K03257 - csv:101221456 810.061