Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00688 ATGAAAATCGAGTCGATGAGACGGGGAAGAATAAGGGAGAGGATCCGTCGAAGCCATCTTTATACGTTTGGTTGCCTCCGGGCAGATAGTGCACGGGAGGTTGACGATTCGAATCCTCTAACAGGACCTGGCTTCTCACGAACTGTTTGTTGTAACCAACCTCATCTCCATGAGAGGAATCCGTTGAGATACTGCACGAATTACATATCCACGACAAAGTATAATGTTCTTTCTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCCGAAGGGTTGCCAATGTGTACTTTCTTATGGCTGCATTGTTATCGCTCACACCGGTGGCCCCATTTTCTGCCATGAGCATGATTGCACCTTTGGTATTTGTTGTTGGGCTCAGTATGGCGAAAGAAGCTCTAGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTTTGTGTCCATAAAGGGGAAGGTGTTTTTGGTTATAGACCATGGCACAAGATTCGAGTAGGAGATATACTGAAAGTAGAGAAGGATCAATTCTTTCCAGCCGATCTGCTTCTCTTGTCATCATGCTATGAGGACGGTATATGTTACGTCGAAACAATGAATTTGGATGGCGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTACCATTGGATGATGATGCAACTTTCAAAGATTTTACTGGAAAAATTTACTGTGAAGATCCCAACCCGAATCTTTACACATTTGTAGGTAACTTTGAGTATGATCGACAGATTTATCCTCTTGATCCCAGTCAGATTCTCCTTAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACTAAATCTCCTTCGAAAAGAAGTGGAATAGAGAGAAAAATGGACAAAATTATTTACATTCTTTTTACTCTCCTTATATTGATCTCATCATTCAGCTCAATAGGTTTTGCTGTGAAAACAAAGTACGAAATGACAGATTGGTGGTATTTACGAACTACTGGCGATGATCATGATCCATTGTACAACCCTCGTAAACCGACCTTATCAGGGCTCATACATTTAATCACAGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGATAGTTAAGGTTCTGCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTGGCAATCCAGCTCGAGCTCGAACGTCAAACTTGAATGAGGAGTTGGGTCAGGTGGACACAATCCTATCTGACAAAACAGGCACTTTGACTTGCAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGCACTGCATATGGTGTTAAAGCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGATCTTGAGGAGGATGGAGAATATTCTGATGTTTATGGGCAAAAGAATAGCCGACAGCCTTCTATGGCAAATAGCAGAAAAGGGTCCGAGATTGAATTGGAGACTGTCGTTACTTCGGGTGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTCGAGGACAGCCGCCTAACTGGTGGAAACTGGTTGAATGAGCCCAATCCTGATGTCATTCTATTATTCTTCCGAATTTTAGGAATTTGTCACACTGCGATTCCCGAGCTGAACGAGGAGACTGGTGTTTATACATACGAGGCAGAGTCCCCCGATGAAGGCGCTTTTCTTGTTGCAGCAAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAGTCAACCTTGGTTGTCCGTGAAAAATATCCTTCACCTACCCAAATAGTTGAAAGGGAATACAAAATTTTGAATCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTATTAGGGACGAGTTCGGCCAGATAATTCTTCTCTGCAAAGGTGCTGATAGCATCATCTTCGATCGACTAGCAAAGAACGGAAGAATGTATGAGGAAGCTACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGTTGCGAACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAATATAATGCTTGGAACAATGAGTTTCAAAAGGCTAAGACATCCATTGGAGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGACCTCATGGAGAGAGAATTAACCCTTGTTGGTGCTACTGCAGTGGAGGATAAGTTGCAGAATGGGGTCCCCCAATGCATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTGCGACAGGGAATGAAGCGGATCTGCATATCGTCGAACTCGGATTCCTTAGCACAGGATGGCAAAGAGGCCATGAAAGCACATATTTTGAATCAAATCGCCAACGCCTCACAAATGATCAATCTGGAAAATGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTCTAACCTATGCTCTCGAGGACGATATGAAGCTCCATTTCCTCGGGCTTGCTGTTGATTGTGCGTCGGTCATTTGCTGTCGAGTCTCCCCTAGACAGAAGGCTCTGATAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTAGCAATTGGCGATGGTGCAAATGATGTAGGAATGATTCAAGAGGCCGATATCGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATTGCTCAATTTCGATTTCTGGAAAGGCTTCTGGTAGTCCATGGCCATTGGTGCTACAAGAGGATAGCACAAATGATATGCTACTTCTTCTACAAGAATATTGCATTTGGATTAACGCTGTTCTACTTTGAAGCATATGCTGGATTTTCTGGGCAATCAATCTATGATGATTTCTACATGTTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGAGTTTTTGAGCAAGATGTTTCTTCTGAGGTCTGCCTCCAGTTCCCTGCACTGTATCAGCAAGGACCCAGAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAACGCTCTCTACTCCTCTCTAGTTACATTCTTCCTCAACCTCATCATCTTCTACGATCAGGCATTCCGCTCAGGCGGCCAAACTGCCGATATGACTACAGTGGGAACGACCATGTTTACGTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTTTCGTGTGGGGTAGTATCGCGATGTGGTATTTGTTCATCTTACTCTATGGAATGGTTTTATCCTCGGGGAATGCCTATAAAATCTTTGTTGAAGCACTAAGTCCTGCCCCTGTTTACTGGATAGCCACCATTTTAGTAACAATTACCTGTAATCTCCCATATCTTGCCCACATATCCTTCCAGAGAAGCTTCCATCCGTTGGATCATCAAATTATCCAAGAAATCAAATACTACAGAAAGGATGTTGAAGATTCACACATGTGGACCAGAGAAAGATCAAAGGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGCTGAAAGGAAAGCTGCAAAAGAAACATTCTTCCCTGGGCATGCCTCCTCCAAATGCTTCTGCTATATCATGA 3705 42.75 MKIESMRRGRIRERIRRSHLYTFGCLRADSAREVDDSNPLTGPGFSRTVCCNQPHLHERNPLRYCTNYISTTKYNVLSFLPKALFEQFRRVANVYFLMAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKVCVHKGEGVFGYRPWHKIRVGDILKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLPLDDDATFKDFTGKIYCEDPNPNLYTFVGNFEYDRQIYPLDPSQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSGIERKMDKIIYILFTLLILISSFSSIGFAVKTKYEMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEIVKVLQASFINQDINMYCEETGNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKASEVELAAARQMAYDLEEDGEYSDVYGQKNSRQPSMANSRKGSEIELETVVTSGDGKDQKSAIKYFSFEDSRLTGGNWLNEPNPDVILLFFRILGICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVREKYPSPTQIVEREYKILNLLDFTSKRKRMSVIIRDEFGQIILLCKGADSIIFDRLAKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEESEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISSNSDSLAQDGKEAMKAHILNQIANASQMINLENDPHAAFALIIDGKTLTYALEDDMKLHFLGLAVDCASVICCRVSPRQKALITRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTTVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSIAMWYLFILLYGMVLSSGNAYKIFVEALSPAPVYWIATILVTITCNLPYLAHISFQRSFHPLDHQIIQEIKYYRKDVEDSHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGMPPPNASAIS 1234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7022461 7027655 - CmoCh17G006880.1 Cmo17g00688 401071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00688 1234 Gene3D - 733 928 IPR023214 -
Cmo17g00688 1234 Pfam Phospholipid-translocating P-type ATPase C-terminal 916 1164 IPR032630 -
Cmo17g00688 1234 SFLD p-type atpase 415 939 IPR044492 -
Cmo17g00688 1234 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1226 - -
Cmo17g00688 1234 Gene3D - 124 297 - -
Cmo17g00688 1234 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1172 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cmo17g00688 1234 Pfam Phospholipid-translocating ATPase N-terminal 51 116 IPR032631 -
Cmo17g00688 1234 Gene3D - 597 732 IPR023299 GO:0000166
Cmo17g00688 1234 CDD P-type_ATPase_APLT_Dnf-like 67 1047 - -
Cmo17g00688 1234 MobiDBLite consensus disorder prediction 1213 1234 - -
Cmo17g00688 1234 Gene3D - 428 440 IPR023214 -
Cmo17g00688 1234 Gene3D - 441 462 IPR023299 GO:0000166
Cmo17g00688 1234 Pfam Cation transport ATPase (P-type) 555 658 - -
Cmo17g00688 1234 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1226 - -
Cmo17g00688 1234 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1160 IPR023298 -
Cmo17g00688 1234 SFLD Haloacid Dehalogenase 415 939 - -
Cmo17g00688 1234 SUPERFAMILY HAD-like 419 932 IPR036412 -
Cmo17g00688 1234 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 531 695 IPR023299 GO:0000166
Cmo17g00688 1234 SUPERFAMILY Calcium ATPase, transduction domain A 151 294 IPR008250 -
Cmo17g00688 1234 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Cmo17g00688 1234 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Cmo17g00688 1234 PRINTS P-type cation-transporting ATPase superfamily signature 888 907 - -
Cmo17g00688 1234 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 860 969 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00688 Cmo-Chr17:7022461 Cmo18g00028 Cmo-Chr18:119077 0 dispersed
Cmo04g01690 Cmo-Chr4:8573938 Cmo17g00688 Cmo-Chr17:7022461 4.85E-43 transposed
Cmo17g00688 Cmo-Chr17:7022461 Cmo08g00748 Cmo-Chr8:4733146 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00688 K01530 - csv:101221220 2307.33