Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00694 ATGCAAGACACTGGTCAAAAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAAGAAGGGATTCAGATGATGATGAAAGGGAATTTTTTGTCTCAACAACAACAACAACATCAACACCAAGTTTTAATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATCACTATTTTGCTCCTCAATCCCAACACCCGCCTCCGCCTCCGCCTCCTCCTCCGAAGAAGAAACGTAACCTCCCCGGAAACCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAAACACTAATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATCTACCATGGAAGCTGAAGCAAAGATCAAACAAAGAAGTGGTGAAGAAGAAGGTATATGTGTGCCCAGAGAGCAGCTGCGTCCACCATGACCCATCAAGAGCCCTTGGAGACCTCACAGGCATCAAAAAGCACTTCTACAGAAAGCATGGCGAAAAGAAGTGGAAATGCGATAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACACTGTTTTCAAGGAGAGACAGTTTTATAACACATAGAGCTTTCTGCGATGCATTGGCGGATGAAAGTGCGAGATCAGCTATGGCGTTAAACCCGCTAATTTCTTCTTATAATAATAATAATAATAATAATAATTTTGTTATCAAACGGGACTTTAGTAATGGTAACAATATGAGGGCGGAGATTCCGCCGTGGCTACACTCGAATGATCTTCGAGGGGAAATTTTCATTGGGAGTTGTCAAGATGAGCATCCGCATCAGAATCATGAAACCCTAAACCCGAACAGGCACGGACACGGACACGGACACGGACACGGACACGGGTGCGGGGCGAGTATTGGACTTCCTCCTCCTTCTTCATATCAGTGTTCTTCGGTTTCTTCTCCTCATATTTCAGCCACTGCATTGCTGCAGAAGGCAGCTCAAATGGGTGCCACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCAAAGGCCCCACAAGATGGTTCACGTGTCTACAGGTGATTATGGGCAGATCGGAGGAGGAGCGGTGAGTTGTAGTAGTAGTTGTACCGATTACGGGCACAAAGCTGCGGCGGTTTCAGCTTCGGAACCCGCCACTTTTCTTCACGACATGATAAATTCCCTCTCTTCTGCTTCGGCTTCTCATCCCTTCCTACAAGATTCCTCCTTTAACGACGTCACCGCATTCCCCGCCATGCATCACCACATCGTCCCCGCTACTGCCACCACCACCGTCACCGCCGCTTCGGGCGGTCGAAGCGACGGTTTAACGAGGGATTTTTTGGGGCTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGGAACTGCATTGTTCCTAATTCCTCCAATCTTCAGAGTCAAATCCAGAAGCCATGGCAGGGTTAG 1581 46.93 MQDTGQKEEEEEEEEEAEEEEEGIQMMMKGNFLSQQQQQHQHQVLMDENLSNLTSASGEATASVSSANHYFAPQSQHPPPPPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFYRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLISSYNNNNNNNNFVIKRDFSNGNNMRAEIPPWLHSNDLRGEIFIGSCQDEHPHQNHETLNPNRHGHGHGHGHGHGCGASIGLPPPSSYQCSSVSSPHISATALLQKAAQMGATMSSTTTTSGSMQRPHKMVHVSTGDYGQIGGGAVSCSSSCTDYGHKAAAVSASEPATFLHDMINSLSSASASHPFLQDSSFNDVTAFPAMHHHIVPATATTTVTAASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLQSQIQKPWQG 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7056431 7062736 + CmoCh17G006940.1 Cmo17g00694 401077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00694 526 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Cmo17g00694 526 SUPERFAMILY beta-beta-alpha zinc fingers 115 213 IPR036236 -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 74 91 - -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 29 48 - -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 1 48 - -
Cmo17g00694 526 Pfam Zinc finger, C2H2 type 116 138 IPR013087 -
Cmo17g00694 526 SMART c2h2final6 158 188 IPR013087 -
Cmo17g00694 526 SMART c2h2final6 116 138 IPR013087 -
Cmo17g00694 526 SMART c2h2final6 193 213 IPR013087 -
Cmo17g00694 526 Coils Coil 1 27 - -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 308 322 - -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 70 101 - -
Cmo17g00694 526 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 52 506 - -
Cmo17g00694 526 Gene3D Classic Zinc Finger 95 168 - -
Cmo17g00694 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 138 IPR013087 -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 1 22 - -
Cmo17g00694 526 MobiDBLite consensus disorder prediction 308 336 - -
Cmo17g00694 526 Gene3D Classic Zinc Finger 171 250 - -
Cmo17g00694 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 52 506 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00694 Cmo-Chr17:7056431 Cmo14g00196 Cmo-Chr14:889620 4.13E-114 dispersed
Cmo01g00064 Cmo-Chr1:257387 Cmo17g00694 Cmo-Chr17:7056431 7.72E-125 wgd
Cmo14g01296 Cmo-Chr14:10837630 Cmo17g00694 Cmo-Chr17:7056431 1.12E-118 wgd
Cmo17g00694 Cmo-Chr17:7056431 Cmo08g00742 Cmo-Chr8:4706485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11401 PF00096 zf-C2H2 0.0053 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00694 K25870 - csv:101220200 657.136