Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00717 ATGGATCATTTGAGTTGGGATGGATATGGATCAAGAGCTACAACGAACACGCCACCGCCGTCGTCGTCATCGTTTTGGAGCAATTACCAACAAGGACATGAACAAAGATTCATGATATCAAATAATTCAAATTCTCCCAACTTCTTCAACTCAGTTCAAGATCTCCCAACTAGCAACATGGATGTTGTTGGACTTGAAACACAGCTCCTCACAAGCTTCAACGGCGATAAAACAGCAACGGCGACAGCGGCGACATGCTCTCTCGAGTCGTTGGACTGCTTACTTTCGGCTACAAACAGCAACACAGACACATCAATTGAAGATGATGGATCAGTATCAATGATGCTATCAGATTACACAAATTTATGGAACTTTGGAGGCAATGCTGCACCATCTTCAAAGAGAAGCCATGATCAAACTCATATCAAACCAACAGAGTACTCTGTTTTCTCAAACAACATCATAACTTTATCTGATTCAACTTCAAACAGCGAAGGTTTCAAGATCATAACAGATCAAAATCTGCCAAAACAAAAGAAACCCAGATCAGAAAAGCCACCAAATTCATCAAACATCAACTTTCAACAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCGATAGCACAAATGAAGGAGATGATATACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTAGAAGCCATAGAAAAGCCCAAAAGGAAGAACGTGAGGATTTCAACAGACCCACAAACAGTTGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATAAGAGTTTTACAAAGGATTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCAGCAAATTATCTGAAGTTCTTGAAGTCTCAGATCAAAGCATTGGAAAATCTTGGGCAAAAGATTGAATCTTTGAATTGCCCATCAAATACCATAGCTTTCTCTTTTAACCCATCTTTTCCCATACAAACTTCTTCATCATCTTCCTCCCATAATAATTTCTCACTCCAAAATCCTTATGATCAACTGATGTAG 1059 40.04 MDHLSWDGYGSRATTNTPPPSSSSFWSNYQQGHEQRFMISNNSNSPNFFNSVQDLPTSNMDVVGLETQLLTSFNGDKTATATAATCSLESLDCLLSATNSNTDTSIEDDGSVSMMLSDYTNLWNFGGNAAPSSKRSHDQTHIKPTEYSVFSNNIITLSDSTSNSEGFKIITDQNLPKQKKPRSEKPPNSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEAIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRIVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSNTIAFSFNPSFPIQTSSSSSSHNNFSLQNPYDQLM 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7213266 7214324 + CmoCh17G007170.1 Cmo17g00717 401100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00717 352 MobiDBLite consensus disorder prediction 185 206 - -
Cmo17g00717 352 Coils Coil 286 313 - -
Cmo17g00717 352 PANTHER TRANSCRIPTION FACTOR BHLH87 15 346 - -
Cmo17g00717 352 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 15 346 IPR045843 GO:0003700|GO:0006355
Cmo17g00717 352 Coils Coil 348 352 - -
Cmo17g00717 352 MobiDBLite consensus disorder prediction 9 27 - -
Cmo17g00717 352 MobiDBLite consensus disorder prediction 331 352 - -
Cmo17g00717 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 308 IPR036638 GO:0046983
Cmo17g00717 352 Pfam Helix-loop-helix DNA-binding domain 257 296 IPR011598 GO:0046983
Cmo17g00717 352 MobiDBLite consensus disorder prediction 1 27 - -
Cmo17g00717 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Cmo17g00717 352 SMART finulus 253 302 IPR011598 GO:0046983
Cmo17g00717 352 Gene3D - 252 315 IPR036638 GO:0046983
Cmo17g00717 352 MobiDBLite consensus disorder prediction 171 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00717 Cmo-Chr17:7213266 Cmo07g01131 Cmo-Chr7:5963757 2.02E-22 dispersed
Cmo01g00080 Cmo-Chr1:369950 Cmo17g00717 Cmo-Chr17:7213266 1.13E-40 wgd
Cmo14g01314 Cmo-Chr14:10989147 Cmo17g00717 Cmo-Chr17:7213266 2.06E-40 wgd
Cmo17g00717 Cmo-Chr17:7213266 Cmo08g00718 Cmo-Chr8:4523831 3.37E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11402 PF00010 HLH 7.70E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00717 - - cmos:111455909 666.381