Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00727 ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCTGCCGCTATCATCGGACACGACGGTAGTGTTTGGGCGCAGAGCGCCTCATTCCCTCAGGTGATTGTCATTTTCGATTACTTTAAGCCGGAGGAGATTTCAGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAGTACATGGTTATCCAGGGAGAGCCAGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCCATGATTGTTGGAATCTATGATGAACCTGTAACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA 417 47.72 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQVIVIFDYFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL 138
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7272105 7273642 + CmoCh17G007270.1 Cmo17g00727 401110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00727 138 PANTHER PROFILIN 1 138 IPR005455 GO:0003779
Cmo17g00727 138 CDD PROF 2 137 IPR005455 GO:0003779
Cmo17g00727 138 Pfam Profilin 1 137 IPR005455 GO:0003779
Cmo17g00727 138 SUPERFAMILY Profilin (actin-binding protein) 2 137 IPR036140 -
Cmo17g00727 138 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmo17g00727 138 PRINTS Plant profilin signature 111 124 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Plant profilin signature 124 137 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Plant profilin signature 78 87 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Plant profilin signature 91 106 IPR005455 GO:0003779
Cmo17g00727 138 Gene3D Dynein light chain 2a, cytoplasmic 1 138 - -
Cmo17g00727 138 PRINTS Profilin signature 120 137 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Profilin signature 47 67 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Profilin signature 107 120 IPR005455 GO:0003779
Cmo17g00727 138 PRINTS Profilin signature 71 85 IPR005455 GO:0003779
Cmo17g00727 138 PANTHER PROFILIN-A 1 138 - -
Cmo17g00727 138 SMART prof_2 1 138 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00092 Cmo17g00727 CCT
Cmo14g01321 Cmo17g00727 CCT
Cmo14g01321 Cmo17g00727 ECH
Cmo01g00092 Cmo17g00727 ECH
Cmo08g00707 Cmo17g00727 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01309 Cmo-Chr12:11468872 Cmo17g00727 Cmo-Chr17:7272105 1.74E-74 dispersed
Cmo01g00092 Cmo-Chr1:420219 Cmo17g00727 Cmo-Chr17:7272105 3.98E-73 wgd
Cmo14g01321 Cmo-Chr14:11035489 Cmo17g00727 Cmo-Chr17:7272105 1.27E-74 wgd
Cmo17g00727 Cmo-Chr17:7272105 Cmo08g00707 Cmo-Chr8:4469155 5.95E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00727 K05759 - pop:7475105 239.58