Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00727 | ATGTCGTGGCAAACGTATGTCGACGATCACCTTATGTGTGAGATTGAAGGCAACCATCTCACCTCTGCCGCTATCATCGGACACGACGGTAGTGTTTGGGCGCAGAGCGCCTCATTCCCTCAGGTGATTGTCATTTTCGATTACTTTAAGCCGGAGGAGATTTCAGCGATTATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCACCAAGTACATGGTTATCCAGGGAGAGCCAGGAGCTGTTGTTCGTGGGAAAAAGGGCGCTGGCGGAGTTACTGTGAAGAAAACTGAGAAAGCCATGATTGTTGGAATCTATGATGAACCTGTAACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTGATCGAACAGGGTTTGTAA | 417 | 47.72 | MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSASFPQVIVIFDYFKPEEISAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVVRGKKGAGGVTVKKTEKAMIVGIYDEPVTPGQCNMVVERLGDYLIEQGL | 138 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7272105 | 7273642 | + | CmoCh17G007270.1 | Cmo17g00727 | 401110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00727 | 138 | PANTHER | PROFILIN | 1 | 138 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | CDD | PROF | 2 | 137 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | Pfam | Profilin | 1 | 137 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 137 | IPR036140 | - | |
Cmo17g00727 | 138 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Plant profilin signature | 111 | 124 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Plant profilin signature | 124 | 137 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Plant profilin signature | 78 | 87 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Plant profilin signature | 91 | 106 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | Gene3D | Dynein light chain 2a, cytoplasmic | 1 | 138 | - | - | |
Cmo17g00727 | 138 | PRINTS | Profilin signature | 120 | 137 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Profilin signature | 47 | 67 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Profilin signature | 107 | 120 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PRINTS | Profilin signature | 71 | 85 | IPR005455 | GO:0003779 | |
Cmo17g00727 | 138 | PANTHER | PROFILIN-A | 1 | 138 | - | - | |
Cmo17g00727 | 138 | SMART | prof_2 | 1 | 138 | IPR005455 | GO:0003779 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00092 | Cmo17g00727 | CCT | |
Cmo14g01321 | Cmo17g00727 | CCT | |
Cmo14g01321 | Cmo17g00727 | ECH | |
Cmo01g00092 | Cmo17g00727 | ECH | |
Cmo08g00707 | Cmo17g00727 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo12g01309 | Cmo-Chr12:11468872 | Cmo17g00727 | Cmo-Chr17:7272105 | 1.74E-74 | dispersed | |
Cmo01g00092 | Cmo-Chr1:420219 | Cmo17g00727 | Cmo-Chr17:7272105 | 3.98E-73 | wgd | |
Cmo14g01321 | Cmo-Chr14:11035489 | Cmo17g00727 | Cmo-Chr17:7272105 | 1.27E-74 | wgd | |
Cmo17g00727 | Cmo-Chr17:7272105 | Cmo08g00707 | Cmo-Chr8:4469155 | 5.95E-90 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00727 | K05759 | - | pop:7475105 | 239.58 |