Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00728 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTACTAGGGATCAAGAAAGAGAAGGACCCATCTGGGAATTTGAATTCAAATTCAACGGCGGTTGTTGGTGACAAAAAGGAGAAGAAACGGTGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAATACAGCCTCCGGTTGAGGCGACTTGGTTTAGATCCTACATTTCCGATTCAGAGAAAGAGCAGAATAGGCACGCAATTGCGGTGGCTGCTGCTACCGCCGCTGCAGCTGACGCTGCTGTGGCAGCGGCTCAGGCGGCGGTGGCAGTCGTCCGGCTGACAAGCCAAGGCAGAGGGTCTGTGTCTGTCACCGGAAGAGATAGATGGGCGGCGGTGAAGATTCAAACAGTTTTTAGAGGCTATTTGGTAAGTAAAAACAGCTTCTTTTTCTTTGCTGTTCATAATCAAACAGGAACAATTGATTTTTTTGTTCCATGTCTGAAGGCTAGAAAGGCGCTTCGAGCTCTCAAAGGGCTCGTTAAATTGCAGGCTGTGGTTAGAGGATTTCTCGTACGAAAACGAGCCGCTGCAACTCTTCACAGTATGCAAGTTCTTTTTAGAGCTCAAACTGCAATTAGGACACAAAGAGCTCGTCGATCTTTCAACAAAGAGAATCGGTTTATCCCCGAGATTCGACCCCGAAAATCTGCAGAACGGTTCGATGAAACAAGGAGTGAATTCCATAGCAAGAGATTATCGGAAACACCCTCCATGAATTCAATGGATGAGAGCCCAAAAATCGTGGAAATCGACACCTACCGAACTCGATCATCGAGGTCACGTCGATACATATCCGCATTCTCCGAATGCGGAGGAGACGATGTAGCTATTTCATCTTCGCCATTGCCATGTTTGAATCGACCTCGAATCATCGATTGCCACAACAATATGGTTCAAGACTTTGAATGGTGCTTGATGGGCGAAGACTGCAAGTTTCCTACAGCGCACAGCACGCCCCGGCTATCGAACAATTCATTCGCCTCGACCAACATGCCAGTCACGCCATCGAAGAGCGTGTGCGGGGACAGCTTCTTTAGGCCATACATGAACTACTACCCGAATTACATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCACAAAGTGCACCAAAGCAAAGGCCAGAGCCTGGGTCAAAGAAGAAGCTGTCATTGAATGAAGTAATGGCAGCAAGGAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAATGGTGCAAATGGTTGAAGAAGAAGAAGAAGAAGAACAAATTATGGGGTTTGAGTGA 1311 47.6 MGKATRWLKGLLGIKKEKDPSGNLNSNSTAVVGDKKEKKRWSFAKSGRDSGQIQPPVEATWFRSYISDSEKEQNRHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSVSVTGRDRWAAVKIQTVFRGYLVSKNSFFFFAVHNQTGTIDFFVPCLKARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQVLFRAQTAIRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSETPSMNSMDESPKIVEIDTYRTRSSRSRRYISAFSECGGDDVAISSSPLPCLNRPRIIDCHNNMVQDFEWCLMGEDCKFPTAHSTPRLSNNSFASTNMPVTPSKSVCGDSFFRPYMNYYPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEVMAARNSLSSVRMQRPSNQMVQMVEEEEEEEQIMGFE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7275951 7277527 - CmoCh17G007280.1 Cmo17g00728 401111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00728 436 MobiDBLite consensus disorder prediction 227 242 - -
Cmo17g00728 436 ProSiteProfiles IQ motif profile. 118 147 IPR000048 GO:0005515
Cmo17g00728 436 MobiDBLite consensus disorder prediction 410 436 - -
Cmo17g00728 436 Gene3D - 115 192 - -
Cmo17g00728 436 ProSiteProfiles Zinc finger C3H1-type profile. 298 330 IPR000571 GO:0046872
Cmo17g00728 436 MobiDBLite consensus disorder prediction 422 436 - -
Cmo17g00728 436 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 160 417 - -
Cmo17g00728 436 MobiDBLite consensus disorder prediction 227 253 - -
Cmo17g00728 436 Pfam Protein of unknown function (DUF4005) 329 413 IPR025064 -
Cmo17g00728 436 PANTHER IQ-DOMAIN 5-RELATED 1 135 - -
Cmo17g00728 436 Pfam IQ calmodulin-binding motif 171 185 IPR000048 GO:0005515
Cmo17g00728 436 Pfam IQ calmodulin-binding motif 119 136 IPR000048 GO:0005515
Cmo17g00728 436 ProSiteProfiles IQ motif profile. 168 194 IPR000048 GO:0005515
Cmo17g00728 436 MobiDBLite consensus disorder prediction 375 396 - -
Cmo17g00728 436 PANTHER IQ-DOMAIN 5-RELATED 160 417 - -
Cmo17g00728 436 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 135 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00094 Cmo17g00728 CCT
Cmo14g01322 Cmo17g00728 CCT
Cmo01g00094 Cmo17g00728 ECH
Cmo14g01322 Cmo17g00728 ECH
Cmo08g00706 Cmo17g00728 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00706 Cmo-Chr8:4464506 Cmo17g00728 Cmo-Chr17:7275951 0 dispersed
Cmo17g00728 Cmo-Chr17:7275951 Cmo14g01779 Cmo-Chr14:13719051 1.49E-36 dispersed
Cmo01g00094 Cmo-Chr1:424535 Cmo17g00728 Cmo-Chr17:7275951 5.58E-67 wgd
Cmo10g00702 Cmo-Chr10:3221407 Cmo17g00728 Cmo-Chr17:7275951 3.04E-102 wgd
Cmo11g00664 Cmo-Chr11:3196822 Cmo17g00728 Cmo-Chr17:7275951 5.81E-111 wgd
Cmo14g01322 Cmo-Chr14:11042130 Cmo17g00728 Cmo-Chr17:7275951 6.09E-88 wgd
Cmo17g00728 Cmo-Chr17:7275951 Cmo08g00705 Cmo-Chr8:4462352 2.49E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00728 - - csv:101204536 575.089