Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00742 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAATGGCAAATATGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGGGAGTGTCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTTTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCTTCTCGGCTGCAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAAAATGGCTATTTCCGCCAGCATACTCAAAATACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACAAGCGGTCAACACAATTTGGCATCTCAGCATCCGCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTAGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTCCTAAATGTGCTGCCAACAGCCAATGGTGGAACCATTGAGTTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCTCGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTCAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTCAGAGCCGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCGATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCAAGCACTGTTCTTGCTCAAAAGATGACAATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGGAACTGGCTGGAGTAGACGCCCTGCAGCCCTACGTTCACTTGGTCAAAGGCTCACCCGGGGGTTTAACGAAGCACTTAACGGGTTCAACGATGAAGGATGGTCCGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAACTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTCGCAAACGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAGAGCGTCGATGCTATTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTGCGGGAGCACCGGTCCGAATGGGCAGACAACAATATCGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGTCCATGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACCATCGAGCACGAAGAGTTTCTCGAAGTGATTAAACTGGAAGGCATTGGCCATACTCCTGAAGAGGCAATGATGCCTAGAGAAATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAAAACGCTATAGGAACTTGTGCTGAGTTAATCTTCGCTCCAATTGATGCCTCGTTTGCCGACGATGCGCCTCTTTTACCCTCAGGGTTTCGGATCATACCACTTGATTCTGGAAAGGTGGGTGAAGCATCCAGCCCGAATCGCACACTCGATCTTGCTTCTGCTCTTGAAATTGGTCCTGCTGGAAATAGAGCACCAAATGACTCTGTAAATTCTGGGTGTTCAAGGTCTGTAATGACGATTGCGTTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCGATGGCTCGACAATATGTTCGTAGTATTATATCATCGGTCCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACACGGCGGACTACGATCTCCACTTGGCACTCCTGAAGCACAGACGCTCGCTCGTTGGATCTGCAACAGTTATAGGTGCTACTTGGGGGTGGAGATATTAAAATCTGGAATAGAAGGAGGGGAGCTTGTCCTAAAAACATTGTGGCATCATTCAGATGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTCGCCAATCAGGCAGGCCTCGACATGCTTGAGACAACCTTAGTCGCACTTCAAGACATAACTTTAGAAAAGATATTCGACGACCATGGAAAAAAGACTCTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGCCTTCAAGGAGGCATATGCCTATCAAGCATGGGCCGACCTGTTTCGTATGAACGAGCCGTAGCTTGGAAGGTGCTAAACGAAGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2520 47.14 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLGAKDTSCEPVVTSGQHNLASQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNGTGWSRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEEAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKVGEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCSRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVEILKSGIEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7362109 7367717 - CmoCh17G007420.1 Cmo17g00742 401125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00742 839 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cmo17g00742 839 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cmo17g00742 839 Pfam START domain 161 369 IPR002913 GO:0008289
Cmo17g00742 839 SMART HOX_1 14 80 IPR001356 GO:0003677
Cmo17g00742 839 CDD START_ArGLABRA2_like 155 371 - -
Cmo17g00742 839 Gene3D - 10 83 - -
Cmo17g00742 839 SUPERFAMILY Bet v1-like 160 371 - -
Cmo17g00742 839 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cmo17g00742 839 Pfam MEKHLA domain 696 838 IPR013978 -
Cmo17g00742 839 CDD bZIP 69 108 - -
Cmo17g00742 839 Gene3D - 195 378 IPR023393 -
Cmo17g00742 839 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 839 - -
Cmo17g00742 839 CDD homeodomain 17 77 IPR001356 GO:0003677
Cmo17g00742 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 839 IPR044830 GO:0003700
Cmo17g00742 839 Coils Coil 72 113 - -
Cmo17g00742 839 ProSiteProfiles START domain profile. 151 366 IPR002913 GO:0008289
Cmo17g00742 839 SMART START_1 160 370 IPR002913 GO:0008289
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00692 Cmo17g00742 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01491 Cmo-Chr1:11533557 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo09g00613 Cmo-Chr9:3058447 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo12g00825 Cmo-Chr12:7468484 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo13g00523 Cmo-Chr13:6138496 Cmo17g00742 Cmo-Chr17:7362109 0 dispersed
Cmo17g00742 Cmo-Chr17:7362109 Cmo20g00522 Cmo-Chr20:2503759 0 dispersed
Cmo17g00742 Cmo-Chr17:7362109 Cmo08g00692 Cmo-Chr8:4405129 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11404 PF01852 START 2.80E-54 CL0209 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00742 K09338 - csv:101213106 1660.58