Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00772 ATGAACTCCGACAACAATCGAGCTGCTCTTGTAACGGATTTTTGGCCGGAGTTCGTTGCAAGCAGTTGGGGTAAAGAATTTGTCGCCGGCGGGTTCGGTGGCGTCGCCGGCGTTATCTCCGGCCACCCACTAGATACTCTTCGTATCAGGCAACAACAATCCGTTTCTGGGTCTGCTTTCAAAATTTTTCGTAATATCATTGCTAATGATGGCCCCGTCGGTCTTTATAGAGGCATGTCTGCTCCATTCGCCTCTATCACTTTTCAGAACGCGGCCGTGTTTCAAATCTACGCGATTCTTTCTCGAGCATTCACCTCCTCGTCGGCTCAATCCAACGGCGACCCACCAAGCTACAAGGCAGTAGCAATGGGAGGATTTGGCACCGGAGCACTACAGAGCTTCTTCCTAACGCCGGTGGAGCTGGTGAAGATCCGCCTACAATTACAGACATCAACCCAACAACCAATTTCTTCTTCATCATCATCTCACAAAGGCCCATTAAGCGTCGCCAAAAGCATCTACAAAACAGAGGGATTAAGAGGCATTTACAGAGGACTTACCATAACCATGCTCCGAGACGCCCCTGCCCATGCCGTCTATTTCTGGACCTATGAGTGCATGAGGGAGCAGTTTCAACCCGGCTGCCGGAGCTCCGGGGAAGAGAGATTCAGCACGGCGTTGGTCGCCGGAGGGCTCGCCGGAGTTGCCAGCTGGGTTTTTTGTTATCCGTTGGATGTGTTGAAGACAAGAATTCAAGCTCCGACACAAAGGTTGTCGCCGAGGTATAAGGGAATTGTGGATTGTGTTAGCAAGAGTGTTAGGGAAGAGGGTTATAGAGTGCTGTGGCGAGGCCTGGAGACGGCTGTTGCTAGAGCTTTTGTGGTGAATGGGGCCATTTTTAGTGCTTATGGGTTAACTTTGAGGTGTTTATTTAGTAATGGAAGCAATTAG 951 50.26 MNSDNNRAALVTDFWPEFVASSWGKEFVAGGFGGVAGVISGHPLDTLRIRQQQSVSGSAFKIFRNIIANDGPVGLYRGMSAPFASITFQNAAVFQIYAILSRAFTSSSAQSNGDPPSYKAVAMGGFGTGALQSFFLTPVELVKIRLQLQTSTQQPISSSSSSHKGPLSVAKSIYKTEGLRGIYRGLTITMLRDAPAHAVYFWTYECMREQFQPGCRSSGEERFSTALVAGGLAGVASWVFCYPLDVLKTRIQAPTQRLSPRYKGIVDCVSKSVREEGYRVLWRGLETAVARAFVVNGAIFSAYGLTLRCLFSNGSN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7488183 7490445 - CmoCh17G007720.1 Cmo17g00772 401155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00772 316 PRINTS Mitochondrial carrier protein signature 26 39 IPR002067 GO:0055085
Cmo17g00772 316 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Cmo17g00772 316 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Cmo17g00772 316 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
Cmo17g00772 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 210 IPR018108 -
Cmo17g00772 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 221 309 IPR018108 -
Cmo17g00772 316 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 13 312 - -
Cmo17g00772 316 Pfam Mitochondrial carrier protein 222 312 IPR018108 -
Cmo17g00772 316 Pfam Mitochondrial carrier protein 22 106 IPR018108 -
Cmo17g00772 316 Pfam Mitochondrial carrier protein 123 212 IPR018108 -
Cmo17g00772 316 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 13 312 - -
Cmo17g00772 316 SUPERFAMILY Mitochondrial carrier 22 303 IPR023395 -
Cmo17g00772 316 Gene3D Mitochondrial carrier domain 122 315 IPR023395 -
Cmo17g00772 316 Gene3D Mitochondrial carrier domain 9 121 IPR023395 -
Cmo17g00772 316 ProSiteProfiles Solute carrier (Solcar) repeat profile. 24 103 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01344 Cmo17g00772 CCT
Cmo01g00116 Cmo17g00772 CCT
Cmo08g00656 Cmo17g00772 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00661 Cmo-Chr6:3329251 Cmo17g00772 Cmo-Chr17:7488183 8.48E-10 dispersed
Cmo16g01204 Cmo-Chr16:8616424 Cmo17g00772 Cmo-Chr17:7488183 3.48E-48 dispersed
Cmo17g00772 Cmo-Chr17:7488183 Cmo19g00255 Cmo-Chr19:1855240 9.23E-11 dispersed
Cmo01g00116 Cmo-Chr1:510705 Cmo17g00772 Cmo-Chr17:7488183 3.78E-142 wgd
Cmo14g01344 Cmo-Chr14:11179878 Cmo17g00772 Cmo-Chr17:7488183 3.67E-145 wgd
Cmo17g00772 Cmo-Chr17:7488183 Cmo08g00656 Cmo-Chr8:4258204 7.68E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00772 K15109 - csv:101222165 474.167