Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00784 ATGGGAATCGGTTCCAATCGAGTTGAAAACTTCGAATGTCGTGAAACGGTGTTGACGATTCCGGCGGAGGCAATGCTGCCGCCGCCGCCGCAACAGGAGGAGGAGATTCACAAAGTTTGCTTGCCGCCGAAGCAGACAACCTGTCAGAAACTCAAACACAAGTTATCGGAGGTGTTCTTCCCCGATGATCCGTTCTACAAATTCCAGAATCAATCGTGGTTAAGAAAAGTGATTTTAGGCCTTCAATCTCTGTTCCCTGTGTTTGAGTGGGGCCCTGGTTATACCCTAGCTCTTTTCAAATCTGATATTGTTTCTGGTCTCACAATCGCTAGCCTCGCTATTCCTCAGGGAATAAGTTATGCGAAACTTGCAAATTTGCCTCCAATCATCGGATTATATTCAAGTTTTGTGCCTCCACTGATATACTCTATCCTTGGGAGCTCTAGACATCTTGCTGTTGGTCCAGTTTCAATTGCCTCTTTGGTCATGGGATCGATGATTACTGAGGCAGTCTCTTATAACGAACAGCCTACTCTCTATCTTAAGTTAGCTTTCACTGCTACCTTCTTTGCTGGTGTGTTCCAAGCATCTTTAGGCTTGTTAAGGTTAGGGTTTGTGATTGATTTTCTGTCAAAGGCTACTCTAGTTGGCTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAACAACTCAAAGGGTTGCTTGGAATTTCCCATTTCACCTCCAAAATGCAATTGATTCCTGTCATGTCTTCTGTTTTTCACCGCAAAGATGAGTGGTCCTGGCAAACTATTGTTTTAGGCTTCATTTTCCTACTCATTCTTCTAGGAACAAGGCATATCAGCATCAAGAAACCAAAGCTTTTCTGGATATCAGCAGCTGCTCCACTGACATCAGTTATTTTGTCCACTCTTTTAGTCTTCCTTCTCAGAGAAAAAGCTCCAGGAATCTCAGTGATTGGTCATTTGCCAAAGGGTATCAATCCTCCATCACTGAACATGCTGTACTTTACTGGTCCTCAATTGGCACTTGCCATTAAAACTGGCATTATAACTGGAATTCTCTCGCTCACTGAAGGAATTGCCGTAGGAAGAACGTTTGCTGGTTTGAAAAACTATCAAGTAGATGGGAACAAAGAAATGATGGCCATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCGTGCTATGTCACTACAGGATCGTTTTCTCGGTCCGCTGTGAATTATAATGCCGGGGCACAAACAGCAATTTCAAATGTTGTGATGTCTGCAGCTGTGCTCATAACATTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGACTAATTGATTACCAAGCAGCCTGTAGGTTGTGGAAAGTTGACAAGCTCGATTTTGTAGCTTGTGTTTGTTCTTTCTTCGGCATTCTTTTCATCTCGGTTCCAATGGGTCTTGCCATTGCAGTTGGAGTCTCTGTTTTCAAGATTCTTCTGCATGTCACCAGGCCAAACACCATAGTTTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACCTCGACCGATACCGTGATGCCTCGAGGGTGCCTTCGTTTCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAATTCAACATACCTGCAAGAAAGGATTCTTAGGTGGGTTAGGGAAGAAGAAGAGCGGGTAAAAGCGACGAACGATAGCCCACTGAAATGTGTAATCCTAGACATGACGGCTGTAACATCCATAGACACAAGTGGTATAGAAACAATATGCGAGCTTAGAAAGATGTTGATGCAAAAATCACTGCAGTTTGTGCTTGCAAATCCGGGTGGAAACACGATGGAAAAACTGCATAAATCAGACGCCTTGGAACGGTTCGAGTTTAACGGTCTCTACCTCTCGGTTGGAGAAGCTGTGAAGGACATTTCTTCTCTATGGAAGAGGCTGCCATAA 1986 43.4 MGIGSNRVENFECRETVLTIPAEAMLPPPPQQEEEIHKVCLPPKQTTCQKLKHKLSEVFFPDDPFYKFQNQSWLRKVILGLQSLFPVFEWGPGYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSILGSSRHLAVGPVSIASLVMGSMITEAVSYNEQPTLYLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGISHFTSKMQLIPVMSSVFHRKDEWSWQTIVLGFIFLLILLGTRHISIKKPKLFWISAAAPLTSVILSTLLVFLLREKAPGISVIGHLPKGINPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAISNVVMSAAVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGILFISVPMGLAIAVGVSVFKILLHVTRPNTIVLGNISGTQIFQNLDRYRDASRVPSFLILAIESPIYFANSTYLQERILRWVREEEERVKATNDSPLKCVILDMTAVTSIDTSGIETICELRKMLMQKSLQFVLANPGGNTMEKLHKSDALERFEFNGLYLSVGEAVKDISSLWKRLP 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7547412 7551274 - CmoCh17G007840.1 Cmo17g00784 401167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00784 661 Pfam Sulfate permease family 99 478 IPR011547 GO:0016021
Cmo17g00784 661 ProSitePatterns SLC26A transporters signature. 128 149 IPR018045 GO:0008271|GO:0008272
Cmo17g00784 661 SUPERFAMILY SpoIIaa-like 535 652 IPR036513 -
Cmo17g00784 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Cmo17g00784 661 PANTHER SULFATE TRANSPORTER 27 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo17g00784 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Cmo17g00784 661 Gene3D STAS domain 510 654 IPR036513 -
Cmo17g00784 661 Pfam STAS domain 531 649 IPR002645 -
Cmo17g00784 661 TIGRFAM sulP: sulfate permease 86 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo17g00784 661 PANTHER - 27 659 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00647 Cmo17g00784 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00027 Cmo-Chr4:144410 Cmo17g00784 Cmo-Chr17:7547412 0 dispersed
Cmo17g00784 Cmo-Chr17:7547412 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo10g00643 Cmo-Chr10:2947910 Cmo17g00784 Cmo-Chr17:7547412 0 wgd
Cmo11g00595 Cmo-Chr11:2867566 Cmo17g00784 Cmo-Chr17:7547412 0 wgd
Cmo17g00784 Cmo-Chr17:7547412 Cmo08g00647 Cmo-Chr8:4222627 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00784 K17471 - csv:101203079 1182.55