Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00792 ATGGAGATCCAAGAAAACAACAGATTTTCAAGTATCTCCTCTCCATTAATGTCATCTTCTTCGATGGCTATCCTCCTGGTTGTTCTATGCTTCGTCTTTAACGACCCGAACGTCGCGTTTGCGGTCGGACCGGGCGCTTCCTTCATTCCCAAAGATAACTTTCTCATTGACTGTGGAGCCAACAAGGAACTTGGTGCACTCCCTGATGGAAGACTCTTCCAAACTGATGAACAATCCGAACAGTACTTAGAGGCCAACGATCATCTCGTAGCAGCCGCCACACCGGAGACGAAGGCACCGTCCCCGGTCGATTTAACAGCAAGAGTATTCCTCCAAGAAGCTACTTACATTTTTCAAATGGCAGAGCCAGGATGGCATTGGCTACGCCTCCATTTCTTGCCTGTTAAAAGCAATGACTTTGATCTCTTACAAGCCAAGTTTTCAGTAGTCACTGAAAAATATGTGTTGCTTCACAGCTTCAACATCAATAATGAATCCACATTTGTTCTTAAGGAGTTTCTTCTCAATATCACTGAACCAAAACTGTCAATCACATTCTTCCCATTGAAGAATTCAGCTGCTTTTATCAATGCCATCGAGGTCGTCTCGGCTCCGATGGACTTGATAGCTGATTCGAACATGGAACTGTCTCCGGTCGGGACGATCGAGGGGCTGACGAAATATGCGTTTCAGACATTGTATAGGTTGAACATGGGAGGACCTATAATCACTCCAAGAAATGACACTATTGGGAGGACATGGGAGACAGATGAGATATACAGGACACCAAAAGCAGCTGGTAGGAGTGTCATTGTTGAGACCAATAGCATTAAATATCAAGATGGGTTGGAAGAAATTGGCATGTTAATAGCTCCTCCAAGTGTGTATGCCAGTGCAGTTCAAATGGGAGAAGCTCATACAAGTGTACCAAATTTTAATGTCACATGGAAATTGGAGGCAGATCCCTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTAAGCAAAGCACTCAATAATCTGTATTTCAATGTTTATGTAAATGGGAAGCCTGCTATAACCAACTTGGATTTGTCACACAAGCTAGGGAGTTTGGCTACTGCATACTACAAGGATGTTGTGGTTAATGCTTCCTTGATGGTAGAGGGATTGACGGTTCAAATTGGTCCAGCGAACGTCGAAACGGGTGATATGAATGCCATTTTGAATGGCTTAGAGGTACTGAAAATAAGCAATTCTGTTAATAGTTTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCAAATGGGAGTAGTCGTGGTACGGTGGCTGCTGTTGGGTTTGCGATGATGTTCGGGGCGTTTGTCGGGCTCGGTGCTATGGTGATGAAATGGCATAAAAGGCCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCTTGGTTGCTTCCTGTACATGCTGGGGACTCTAGCTTTATGAGCAAGAGCTCATATGGATCACACAAGACCAACACTGGTTTAGGGCTTGGCAGGCTGTTTAGTTTGGCAGAGCTGCAAGAAGCCACCAAGAACTTTGATCCAAATTCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTATATTGGAGTGATAGATGAAGGGACAAAAGTTGCTGTCAAGAGAGGAAATGCACAATCTGAACAAGGCATTACAGAATTCCAAACTGAAATTCATATGCTTTCAAAGCTCAGACACAGGCATTTGGTTTCTTTGATTGGTTATTGTGATGAAAACTCTGAGATGATCTTGGTTTATGAGTTCATGTCAAATGGTCCATTCAGAGATCACTTGTATGGAAAAGATATGACTCCATTGTCATGGAAGCAAAGGCTAGAGATCTGTATTGGAGCGGCTCGAGGTCTTCATTACCTTCATACAGGAACAGCTCAGGGAATCATTCACCGTGATGTCAAAACAACCAATATTTTGCTCGACGAGAGCTTCACTGCTAAAGTAGCTGATTTCGGGCTATCGAAGGATGCTGCGATGGGGCAGGGACATGTGAGTACTGCAGTGAAGGGAAGTTTTGGATATTTGGATCCAGAGTACTTCAGGAGGCAACAGTTGACAGAGAAATCAGATGTTTATTCGTTTGGAGTTGTTTTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCTTCTTTACCAAGAGAGCAAGTGAACTTGGCTGATTGGGCAATGCAGTGTAAGAGAAAAGGGTGTTTGGAGAAGATAATGGATCCTCTTCTAGTTGGAGCCACAAATCCTGAGTCCATGACCAAGCTTGAAGAAGCAGCAGAGAAGTGTCTTGCTGAGCATGGTGTAGATAGGCCAAGCATGGGGGATGTGCTGTGGAATTTGGAGTATGCATTGCAACTTCAAGAATCCTTCTCAGAAGGCAAAGGTGAAGATGAAAGCACAGTCGCAAGTGTGGCAGCTGTTGCCCCCGCGACCGCTGTCGACGCTTCTACAAATGCACCGAACTCGGTCGAGCGCCCTGTCGTGCAGGCAGAACGGAGTAGGCAACCAGTAGAGGTCGAAGACGTCGATGATGACTCGGGAAGTGCAATGTTTGCTCATTTCTCTAATCTCAATGGTAGATGA 2610 44.75 MEIQENNRFSSISSPLMSSSSMAILLVVLCFVFNDPNVAFAVGPGASFIPKDNFLIDCGANKELGALPDGRLFQTDEQSEQYLEANDHLVAAATPETKAPSPVDLTARVFLQEATYIFQMAEPGWHWLRLHFLPVKSNDFDLLQAKFSVVTEKYVLLHSFNINNESTFVLKEFLLNITEPKLSITFFPLKNSAAFINAIEVVSAPMDLIADSNMELSPVGTIEGLTKYAFQTLYRLNMGGPIITPRNDTIGRTWETDEIYRTPKAAGRSVIVETNSIKYQDGLEEIGMLIAPPSVYASAVQMGEAHTSVPNFNVTWKLEADPSFGYLIRFHFCDIVSKALNNLYFNVYVNGKPAITNLDLSHKLGSLATAYYKDVVVNASLMVEGLTVQIGPANVETGDMNAILNGLEVLKISNSVNSLDGEFGVDGKSANGSSRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMSKSSYGSHKTNTGLGLGRLFSLAELQEATKNFDPNSIIGVGGFGNVYIGVIDEGTKVAVKRGNAQSEQGITEFQTEIHMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKDMTPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDESFTAKVADFGLSKDAAMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLPREQVNLADWAMQCKRKGCLEKIMDPLLVGATNPESMTKLEEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQESFSEGKGEDESTVASVAAVAPATAVDASTNAPNSVERPVVQAERSRQPVEVEDVDDDSGSAMFAHFSNLNGR 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7601963 7604572 + CmoCh17G007920.1 Cmo17g00792 401175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00792 869 PANTHER BNAC03G60370D PROTEIN 38 845 - -
Cmo17g00792 869 Gene3D Transferase(Phosphotransferase) domain 1 596 816 - -
Cmo17g00792 869 SUPERFAMILY Protein kinase-like (PK-like) 496 790 IPR011009 -
Cmo17g00792 869 ProSiteProfiles Protein kinase domain profile. 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00792 869 Gene3D - 228 414 - -
Cmo17g00792 869 Gene3D - 53 207 - -
Cmo17g00792 869 PANTHER OS07G0166700 PROTEIN 38 845 IPR045272 GO:0004714|GO:0006468
Cmo17g00792 869 Pfam Malectin-like domain 56 411 IPR024788 -
Cmo17g00792 869 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cmo17g00792 869 MobiDBLite consensus disorder prediction 822 861 - -
Cmo17g00792 869 SMART serkin_6 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00792 869 ProSitePatterns Protein kinases ATP-binding region signature. 526 548 IPR017441 GO:0005524
Cmo17g00792 869 Pfam Protein tyrosine and serine/threonine kinase 525 785 IPR001245 GO:0004672|GO:0006468
Cmo17g00792 869 CDD STKc_IRAK 526 790 - -
Cmo17g00792 869 Gene3D Phosphorylase Kinase; domain 1 488 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00186 Cmo-Chr11:903039 Cmo17g00792 Cmo-Chr17:7601963 0 dispersed
Cmo17g00792 Cmo-Chr17:7601963 Cmo20g00478 Cmo-Chr20:2222862 0 dispersed
Cmo17g00792 Cmo-Chr17:7601963 Cmo08g00610 Cmo-Chr8:3704128 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75017 PF12819 Malectin_like 5.10E-37 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00792 - - csv:101220967 1508.81