Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00798 ATGAGAAAAGAAGAAAATCTCATCAGGGAAAATATTGGAGAATTTCCTGGTAGAATTACACGTGCTCGAGCTGCTGCATTTAGTGCGTCAGGGCAGCTGCCTCCAAAAGTTCCTGCATATCAACAAGAGAGGCGGGCTGCACGAGCTAATTTGAAAAGAGCTGCTTCTGAAGAAAATAGCTGCCCTTCTATTGCTAAATCATCTCGGCCATGTAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAATATTGGCTGTGAACCTTCGTACTCAAAATGTTCTAACGCAGCTAAAATTGAGACCAATAGTTGCAAGCCAACACTCAGAAACCGTATCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTGGCTAACTCCAAGGTTCCTCTTGGTCTTAGAACCAAAGGAGCTTCATCAGTTGGTGGGGCGTACTCCAAGCCTCTTGATCTTAGAACACAAGGTGTACAAGCAAATGTGAAATCAAAAGCTAAGTTGAAAGTTGAGCATTCAAGTAATTCTGAAGACCATGAGGCACATCATCGGGTCGGTGGTATAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCCCAAAATTTTCAAAATAAAGAGAAAGTGTCGCTTATGGGGACTAGAAGCAACCTGAACATTACAGACATTGATTGTAATGACAGAGATACTCAACTGTGCACTGTCTATGCCAATGATATCCATAACAATTTACGCGTTGCTGAGCTAACCAGAAGACCGCGTCCCAATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTCGTTGAGGTATCGGAGGAATACAAGTTAGTACCAGATACGCTCTACCTAACTGTATTTTTCATTGATTGGTATCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCTCTTGCATGTTAATCGCCTCGAAGTATGAAGAAATTTGTGCTCCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAGTATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATACGTTCGAGCTGCGCAAACGACATATAAGACCCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTCGCCGAATTAACACTGGTTGACTACGGTTTCTTGAACTTTCTTCCCTCAGTTATAGCTGCATCAGCTGTATTTCTTTCAAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATACTATACCTCATATAAAGCATCAGATCTGAAAAAAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTTAGCTCGATTCGCGTCAAGTATCGACAAGAAAAGTTCAAAGGCGTCGCAACTTTGTCTTCCCCGAAATTACTCGATACACTATTCTGA 1512 42.66 MRKEENLIRENIGEFPGRITRARAAAFSASGQLPPKVPAYQQERRAARANLKRAASEENSCPSIAKSSRPCKRRAVLQDVSNIGCEPSYSKCSNAAKIETNSCKPTLRNRIKKSKGASSVGVANSKVPLGLRTKGASSVGGAYSKPLDLRTQGVQANVKSKAKLKVEHSSNSEDHEAHHRVGGIKEEVTSDFRDDNWRSQSPSESQNFQNKEKVSLMGTRSNLNITDIDCNDRDTQLCTVYANDIHNNLRVAELTRRPRPNFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWYLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQVLKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKKTVLALQDLQLNTNGCPLSSIRVKYRQEKFKGVATLSSPKLLDTLF 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7649458 7655255 + CmoCh17G007980.1 Cmo17g00798 401181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00798 503 SMART Cyclin_C_2 373 496 IPR004367 -
Cmo17g00798 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Cmo17g00798 503 Coils Coil 37 57 - -
Cmo17g00798 503 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Cmo17g00798 503 PANTHER CYCLIN-A2-4 51 503 - -
Cmo17g00798 503 CDD CYCLIN 274 359 IPR013763 -
Cmo17g00798 503 CDD CYCLIN 373 463 IPR013763 -
Cmo17g00798 503 PANTHER CYCLINS 51 503 IPR039361 -
Cmo17g00798 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Cmo17g00798 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Cmo17g00798 503 MobiDBLite consensus disorder prediction 165 210 - -
Cmo17g00798 503 Gene3D - 258 371 - -
Cmo17g00798 503 MobiDBLite consensus disorder prediction 165 198 - -
Cmo17g00798 503 SMART cyclin_7 280 364 IPR013763 -
Cmo17g00798 503 SMART cyclin_7 377 465 IPR013763 -
Cmo17g00798 503 PIRSF Cyclin_A_B_D_E 35 502 IPR039361 -
Cmo17g00798 503 Gene3D - 244 492 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01578 Cmo-Chr1:12108486 Cmo17g00798 Cmo-Chr17:7649458 1.60E-131 dispersed
Cmo09g00483 Cmo-Chr9:2184891 Cmo17g00798 Cmo-Chr17:7649458 4.40E-143 dispersed
Cmo15g00668 Cmo-Chr15:3266992 Cmo17g00798 Cmo-Chr17:7649458 4.64E-106 dispersed
Cmo12g00256 Cmo-Chr12:1659706 Cmo17g00798 Cmo-Chr17:7649458 3.08E-111 wgd
Cmo17g00798 Cmo-Chr17:7649458 Cmo08g00616 Cmo-Chr8:3755573 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00798 K06627 - csv:101222299 904.434