Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00824 ATGGCGTCTTGTGAATCTCTTGGGATTTGTGTTGGTCTCCATTTTGGGAATTTGGGTCTTTCTCATGCCTCCCACTACGATCGCATCATTGGGGTTCCAGGATTCTTCATACGAACTCTTTCTGAACTAGGTTTTATTAAGAACTGTTTGTTTCCTGGTTTAAGCACTCAAAGAGACTCCATGTTAGGTGATGACCAGAAAATTGGTTGTTCTTCCCAAGAACAGCCACTCTGTTCTGGGAATTTGATGATGTTCATGAAGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGGTTTTTTCTGGGGTTTCTTCAAACTATATTGAATCTGTGGGAGATAGAAGTAATGGTGAAATAATTTTCATTCCACCAGTAGTGGGAATTTTAGATGATCCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGTCTTCATTTCCTCACCAATATCAAACCCCTGCTATGGCTTCTTCATTCATTAATGCATCTTCTTCGATCTTCGAGAAGAGGCTGAATCCAAAACCTTATAATGGTATGCATATAGCGGCGGGATCTGGGAATTCGACATTGAATTTGGTATACGTCGAAGCTGCACAGCAGGTGCTCGACGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAGGAAACTCAAAGGTTCCAGTGGTTTGGGTGTTGATTTCTGTAGAGAAAATGATGGGGGATGTAATGATATGAATGGGGAGATATGTTCCGGTTCGAGGGAGTCGTCAATCGCGAATTCGTTGCGTGATTTATCGCCTACCGAACGACAGAATTTGAAGAGCAAAAACTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACGAACATCTGCAATTGTTGTCGTCATCTTTCGACACGGTAGCAGGCCGGGGGGCTGCAGAGTTCTACACTGCGCTTGCACACCAGACTATTTCGTGTCACTTTCGACGCTTGCAAGATGCAATCAATGCACAGATTGAGGTCACCAGGAGAACATTGGGGGAGCAAGATACTTCCCATTTTGTTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAGCACCTCAGGCAACAGAGGGCACTTCAACAGCTCGGTGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCTGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAGCTTAAGCTATCAAGACAAACTGGCCTGACCAGAAACCAAGTTGCGAACTGGTTTATAAACGCACGTGTTCGGCTATGGAAACCAATGGTCGAGGAGATGTACAAAGAAGAATTCGGAGACTCGAACATGGACGACATCAAATCCTCACCAGAAAATGCATCCAAAGCCTCATGGAACAATTCACTATTCTCCGAAGATAGAGGAGGGGACGAGTTACACGAGTTGCACGAGCAAGTCCTCTACCCCTCATGTTCTACCAACGACATGATCAAGTCGACTAACTTCTCGGTCGGAGGAGACGTTTCACTTGCGCTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAGTAGTACCAACAGAATGGTTGGTTCAGTGGAGCTTGAGGCACAAGATTTGCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGGCTCACCAGCTCAAATATGTTGCACGATTTTGTAGTTTGA 1755 45.3 MASCESLGICVGLHFGNLGLSHASHYDRIIGVPGFFIRTLSELGFIKNCLFPGLSTQRDSMLGDDQKIGCSSQEQPLCSGNLMMFMKNQDPSCRDYSEVFSGVSSNYIESVGDRSNGEIIFIPPVVGILDDPNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMASSFINASSSIFEKRLNPKPYNGMHIAAGSGNSTLNLVYVEAAQQVLDEMVSIREALKELKSRKLKGSSGLGVDFCRENDGGCNDMNGEICSGSRESSIANSLRDLSPTERQNLKSKNSKLLSLLGEVDRRYKQYYEHLQLLSSSFDTVAGRGAAEFYTALAHQTISCHFRRLQDAINAQIEVTRRTLGEQDTSHFVQEGIPRLRFVDQHLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLSRQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDDIKSSPENASKASWNNSLFSEDRGGDELHELHEQVLYPSCSTNDMIKSTNFSVGGDVSLALELKHCEGDEFGMFGSSTNRMVGSVELEAQDLPCLEPERHHQCRLTSSNMLHDFVV 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7756250 7758728 + CmoCh17G008240.1 Cmo17g00824 401207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00824 584 Gene3D - 389 466 - -
Cmo17g00824 584 Pfam Homeobox KN domain 409 448 IPR008422 GO:0003677|GO:0006355
Cmo17g00824 584 ProSiteProfiles 'Homeobox' domain profile. 389 452 IPR001356 GO:0003677
Cmo17g00824 584 Coils Coil 208 228 - -
Cmo17g00824 584 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 78 494 - -
Cmo17g00824 584 SMART prehox3 186 344 IPR006563 -
Cmo17g00824 584 Pfam Associated with HOX 204 342 IPR006563 -
Cmo17g00824 584 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 494 - -
Cmo17g00824 584 SMART HOX_1 392 456 IPR001356 GO:0003677
Cmo17g00824 584 SUPERFAMILY Homeodomain-like 393 460 IPR009057 -
Cmo17g00824 584 CDD homeodomain 392 453 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00824 Cmo-Chr17:7756250 Cmo20g00834 Cmo-Chr20:4158381 3.62E-102 dispersed
Cmo17g00824 Cmo-Chr17:7756250 Cmo08g00640 Cmo-Chr8:4164456 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11411 PF07526 POX 2.70E-33 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00824 - - cpep:111807101 1016.91