Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00857 ATGGGAGAGAGATTAGGAGGTTGGGCTATGAATCTTCTCACTATTTTACTACCCATGTGGGTTTCCTCTTCCTTGTTCCCAATAATTGATGCCAGACCACAGCTCACTGGGTTTTCAATTTCTAGGACCAGACTCCAATCCATTCCTCTCATTGTGGCCAAAATGGAAGCTCAATCCCCAGGAGCTGCAGATGTTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATTCTTGTAGCTTTGGTTGTTTCTTCCACACTTCTTGGAGCTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGTAAAACGTCGAATCTTGATGATGAAAAATGTCGAAAGAATTTGGAGGGTTCGAAAGGGGTGACGTTAAATCCCATCATATCAAGGTTTAACTCACTGAGGTTAGCTAACTTTAAAGGTTCGGTTTCGACGTTCGACTATAAACTGTTGGAAGCTGCTACTGATAGCTTCAGCAAAAACAATGTCTTGGGCCATGGTGGTTCAGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAGAATCGATAATGGAGGAGCGGATGCTGAAAGGGAATTCGAGAATGAGTTGAGCTGGTTGTGTAAAATTCGACATCAAAACGTAATCAAACTCTTGGGACATTGCATTCATGGCGAAACACGGTTTCTCGTTTACGAGATGATGCATAATGGATCTTTGGAGTCTCAGTTGCACGGACCTTCTCGTGGATCGGCTTTAACTTGGCATCTCCGGATGAAGATTGCTGTCGATGTTGCAAGAGGATTGGAATATCTTCATGAGCATCGAAATCCTCCTGTCGTTCATCGGGATTTGAAATCGTCGAATATCCTTCTCGATTCGGACTTTAACGCCAAGCTCTCTGACTTTGGCCTTGTTGTCAACTTGGGAGCTCAAAACAAAAACATAAAGCTCTCGGGAACGTTGGGTTATGTCGCCCCGGAATACCTTCTAGACGGTAAGCTAACCGATAAGAGCGATGTGTATGCTTTTGGCGTTGTTCTTCTCGAGCTTCTAACAGGGAAAAAGCCTGTCGAGAAGACGGGACCAACTCATTCCCAATCTCTAGTTTCATGGGCGATCCCGCAGCTCAGCGACAGATCAAAGCTACCGAAAATTGTCGATCCCGTGATAAAGGACACGATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCGGTGTTATGTGTACAATCAGAACCGAGCTATCGACCGTTAGTAACTGACGTTCTACATTCCCTCATCCCTCTCGTACCGGTAGAGCTTGGAGGATCTCTAAGAATTACAGAACCTCTGCATCCAAAAATGCGTTCATCGACCCGGTAA 1368 44.37 MGERLGGWAMNLLTILLPMWVSSSLFPIIDARPQLTGFSISRTRLQSIPLIVAKMEAQSPGAADVRVVHHQDLNKRILVALVVSSTLLGAILLFLLCFWIYRRKTSNLDDEKCRKNLEGSKGVTLNPIISRFNSLRLANFKGSVSTFDYKLLEAATDSFSKNNVLGHGGSGHVYKACFNDKLLAAVKRIDNGGADAEREFENELSWLCKIRHQNVIKLLGHCIHGETRFLVYEMMHNGSLESQLHGPSRGSALTWHLRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLVVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKTGPTHSQSLVSWAIPQLSDRSKLPKIVDPVIKDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKMRSSTR 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7907165 7910003 + CmoCh17G008570.1 Cmo17g00857 401240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00857 455 Pfam Protein kinase domain 160 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00857 455 Gene3D Transferase(Phosphotransferase) domain 1 235 433 - -
Cmo17g00857 455 Gene3D Phosphorylase Kinase; domain 1 124 234 - -
Cmo17g00857 455 SMART serkin_6 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00857 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Cmo17g00857 455 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Cmo17g00857 455 ProSiteProfiles Protein kinase domain profile. 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00857 455 CDD STKc_IRAK 165 431 - -
Cmo17g00857 455 SUPERFAMILY Protein kinase-like (PK-like) 135 428 IPR011009 -
Cmo17g00857 455 PANTHER BNAC02G46490D PROTEIN 11 449 - -
Cmo17g00857 455 PANTHER OS01G0750732 PROTEIN 11 449 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00857 Cmo-Chr17:7907165 Cmo10g01152 Cmo-Chr10:9795572 3.38E-91 dispersed
Cmo12g00305 Cmo-Chr12:1903675 Cmo17g00857 Cmo-Chr17:7907165 4.63E-156 wgd
Cmo17g00857 Cmo-Chr17:7907165 Cmo08g00589 Cmo-Chr8:3590391 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75018 PF00069 Pkinase 3.20E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00857 - - bhj:120085274 806.594