Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00858 | ATGGCCCGACCTCAACAGCGCTATCGTGGCGTCCGACAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTGGGGACGTTCGAGACAGCGGAGGACGCAGCCCGAGCTTATGACGAGGCAGCTCGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATTCAATCCAAACGATCAACAATCGTCATCGTCATCATCGTCTTCCTCCAAACTTCTCTCCGCCCCTCTGATGGCGAAATTACACAAATGTCATTTAGCCTCACTACAAATCGCCAAAAAACACGCTGCCCATAAACAACACCCCGGATTCGAGCCCAACTACGCCGTATACGGCGGCCCTTCCCCGAGCATTTCCCAAACCACCACCCACCGGTGGCGACAAGAAGAAACCCAAATAGAGACCAACAACGACAACAACAACATTCATCATCAACAATGCCTTCAACCACTTGAGGATGATGACATTGAACAAATGATACAAGAGCTATTAGACCTCGGATCATTCGAAATTATTACATGA | 552 | 49.82 | MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAPLMAKLHKCHLASLQIAKKHAAHKQHPGFEPNYAVYGGPSPSISQTTTHRWRQEETQIETNNDNNNIHHQQCLQPLEDDDIEQMIQELLDLGSFEIIT | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 7913388 | 7914114 | - | CmoCh17G008580.1 | Cmo17g00858 | 401241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00858 | 183 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | PANTHER | ETHYLENE RESPONSE FACTOR | 1 | 182 | - | - | |
Cmo17g00858 | 183 | SUPERFAMILY | DNA-binding domain | 7 | 65 | IPR016177 | GO:0003677 | |
Cmo17g00858 | 183 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | MobiDBLite | consensus disorder prediction | 62 | 81 | - | - | |
Cmo17g00858 | 183 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00858 | 183 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 182 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00361 | Cmo-Chr5:1637315 | Cmo17g00858 | Cmo-Chr17:7913388 | 4.92E-58 | dispersed | |
Cmo01g00179 | Cmo-Chr1:785316 | Cmo17g00858 | Cmo-Chr17:7913388 | 8.15E-51 | wgd | |
Cmo12g00308 | Cmo-Chr12:1914204 | Cmo17g00858 | Cmo-Chr17:7913388 | 3.05E-59 | wgd | |
Cmo17g00858 | Cmo-Chr17:7913388 | Cmo08g00588 | Cmo-Chr8:3585257 | 1.48E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11414 | PF00847 | AP2 | 7.50E-12 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00858 | - | - | cmo:103499832 | 273.092 |