Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00858 ATGGCCCGACCTCAACAGCGCTATCGTGGCGTCCGACAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGTTGGGGACGTTCGAGACAGCGGAGGACGCAGCCCGAGCTTATGACGAGGCAGCTCGGCTGATGTGCGGTCCAAAGGCACGAACCAACTTCCAATTCAATCCAAACGATCAACAATCGTCATCGTCATCATCGTCTTCCTCCAAACTTCTCTCCGCCCCTCTGATGGCGAAATTACACAAATGTCATTTAGCCTCACTACAAATCGCCAAAAAACACGCTGCCCATAAACAACACCCCGGATTCGAGCCCAACTACGCCGTATACGGCGGCCCTTCCCCGAGCATTTCCCAAACCACCACCCACCGGTGGCGACAAGAAGAAACCCAAATAGAGACCAACAACGACAACAACAACATTCATCATCAACAATGCCTTCAACCACTTGAGGATGATGACATTGAACAAATGATACAAGAGCTATTAGACCTCGGATCATTCGAAATTATTACATGA 552 49.82 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAPLMAKLHKCHLASLQIAKKHAAHKQHPGFEPNYAVYGGPSPSISQTTTHRWRQEETQIETNNDNNNIHHQQCLQPLEDDDIEQMIQELLDLGSFEIIT 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7913388 7914114 - CmoCh17G008580.1 Cmo17g00858 401241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00858 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cmo17g00858 183 PANTHER ETHYLENE RESPONSE FACTOR 1 182 - -
Cmo17g00858 183 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cmo17g00858 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 MobiDBLite consensus disorder prediction 62 81 - -
Cmo17g00858 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cmo17g00858 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 182 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00361 Cmo-Chr5:1637315 Cmo17g00858 Cmo-Chr17:7913388 4.92E-58 dispersed
Cmo01g00179 Cmo-Chr1:785316 Cmo17g00858 Cmo-Chr17:7913388 8.15E-51 wgd
Cmo12g00308 Cmo-Chr12:1914204 Cmo17g00858 Cmo-Chr17:7913388 3.05E-59 wgd
Cmo17g00858 Cmo-Chr17:7913388 Cmo08g00588 Cmo-Chr8:3585257 1.48E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11414 PF00847 AP2 7.50E-12 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00858 - - cmo:103499832 273.092