Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00865 ATGCCGGTCGACGGTTCTTCAACCACCGCCCCCACCGTTTGCGTCACCGGCGCCGGCGGCTTCATTGCCTCATGGATAGTTAAGCTTCTTCTCCAGAAAGGCTATATCGTGAGAGGAACCGTCAGAAATCCAGAGGACCCGAAGAACGGCCATTTGAAAGAATTTGAAGGCGCGGCGGAGCGATTCAGTTTGTATAAAGCCGATCTTCTCGATTTCGAGAGCCTTAGGGCGGCGATTAACGGATGCGATGGCGTTTTCCACACGGCGTCGCCTGTAACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAATGGCACGAAGAATGTTATAATCGCGGCGGCCGAAGCCAAAGTCCGTCGCGTGGTTTTCACTTCGTCGATTGGTGCAGTCTACATGGACCCCAACCGTGGTCCAGACGAGATCGTAGACGAGTCCTGCTGGAGCGATCTAGAGTTCTGCAAGAACACCAAGAATTGGTATTGCTATGGAAAAGCTGTGGCGGAGCAGGCGGCATGGGAGGTTGCGAAGGAGAAGGAAGTGGACTTGGTGGTGGTGAATCCGGTGCTGGTGCTGGGCCCACTGTTGCAACCCACCATTAATGCCAGCATTATCCACATACTCAAGTACTTGACTGGATCAGCTAAGACGTACGCCAATTCCGTTCAGGCGTACGTCCACGTGAAGGATGTTGCTCTTGCACATATCCTCGTGTACGAGAATCCCTCCGCCTCCGGCCGGTACCTCTGCGCCGAGAGTGTTCTCCACAGAGGGGAGATCGTTGAGATTCTTGCCAAATTGTTCCCGGAATACCCTGTTCCCACCAAGTGCTCAGATGAAGTGAACCCAAGGAAGAAGGCATACAAATTCTCAAACCAGAAGCTGAAGGACTTAGGATTGGAGTTCACTCCAGTGAAGCAGTGTCTATATGAAACCGTTAAGAACTTACAGGAGAAAGGTCATCTCCCGACCCCCACTTCTACTCAACCAGCAGACTCCATTCGAATTCAATCTTAA 1017 52.51 MPVDGSSTTAPTVCVTGAGGFIASWIVKLLLQKGYIVRGTVRNPEDPKNGHLKEFEGAAERFSLYKADLLDFESLRAAINGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEAKVRRVVFTSSIGAVYMDPNRGPDEIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKEVDLVVVNPVLVLGPLLQPTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYENPSASGRYLCAESVLHRGEIVEILAKLFPEYPVPTKCSDEVNPRKKAYKFSNQKLKDLGLEFTPVKQCLYETVKNLQEKGHLPTPTSTQPADSIRIQS 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7944762 7948285 + CmoCh17G008650.1 Cmo17g00865 401248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00865 338 Gene3D - 4 337 - -
Cmo17g00865 338 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Cmo17g00865 338 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 326 - -
Cmo17g00865 338 MobiDBLite consensus disorder prediction 319 338 - -
Cmo17g00865 338 CDD FR_SDR_e 13 300 - -
Cmo17g00865 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 316 IPR036291 -
Cmo17g00865 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 326 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01075 Cmo-Chr14:5965793 Cmo17g00865 Cmo-Chr17:7944762 0 dispersed
Cmo14g01076 Cmo-Chr14:5989799 Cmo17g00865 Cmo-Chr17:7944762 0 dispersed
Cmo17g00865 Cmo-Chr17:7944762 Cmo18g01034 Cmo-Chr18:11105165 7.87E-80 dispersed
Cmo01g00189 Cmo-Chr1:822203 Cmo17g00865 Cmo-Chr17:7944762 1.42E-160 wgd
Cmo14g01074 Cmo-Chr14:5943038 Cmo17g00865 Cmo-Chr17:7944762 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00865 K09753 - csv:101213412 614.379