Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00873 ATGATCCGTTTGCTTGCCAAGAATTCTTCAGTTGTTGTTAGTTTGGTTTTGATTAATTTCGAATGGGAGTTACCGAAGCAAGCCTGCGTTGCGGCTTGGAAAATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGACGATGGTGAGAATGAAAGTCTTCGGTATGGGGTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGACGCTCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTACGATGGCCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTCCATCAACAGGTGCTCAAGCATGAATCATACATGGCTGGGGATTTAGGAACTTCAGTACAGAAGGCCTTTCTTAGAATGGATGAGATGATGTGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTGGTGAAGCTAACAATCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATACGAAATAACCAACTTGTGGTGGCCAATGCTGGGGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAACCTATCTAAAGATCACAAGCCTGATCTTGAGGCTGAGAAGGACAGGATTTTGAAAGCCGGGGGATTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGGGCTATAGGTGACATGGAGTTTAAGCAGAATGAAACTATGCCTGCAGAAAAGCAGATTGTAACTGCCAATCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTTATTGCCTGCGATGGCATCTGGGATTGTATGTCCAGCCAACAACTGGTTGATTACATTGGAGATCAACTTAAAACGGAAAGTAAACTCTCAGTCATTTGTGAGAGAGTATTTGACAGATGCTTGGCACCCTCAGTTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAATTTAAGAAGCCCATCCACAACCCAAATGACGCTTCTACTTCTGCTGCGGAGCTGCCTTCAACGTCCAATCAACCGGTGTCTAATCCGAACGAAGGCCCTTCTAAAACTGAATAG 1197 45.03 MIRLLAKNSSVVVSLVLINFEWELPKQACVAAWKMGIYLSSPKTEKASDDGENESLRYGVSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHQQVLKHESYMAGDLGTSVQKAFLRMDEMMCGQRGWRELAILGDKMDKISGMIEGFIWSPKSGEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEAEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNETMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSVGGEGCDNMTMILVQFKKPIHNPNDASTSAAELPSTSNQPVSNPNEGPSKTE 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7972189 7977314 - CmoCh17G008730.1 Cmo17g00873 401256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00873 398 MobiDBLite consensus disorder prediction 369 398 - -
Cmo17g00873 398 SMART PP2C_4 47 360 IPR001932 -
Cmo17g00873 398 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 32 375 - -
Cmo17g00873 398 CDD PP2Cc 57 362 IPR001932 -
Cmo17g00873 398 PANTHER PROTEIN PHOSPHATASE 2C 32 375 IPR015655 GO:0004722|GO:0006470
Cmo17g00873 398 SUPERFAMILY PP2C-like 37 363 IPR036457 -
Cmo17g00873 398 Pfam Protein phosphatase 2C 57 136 IPR001932 -
Cmo17g00873 398 Pfam Protein phosphatase 2C 191 346 IPR001932 -
Cmo17g00873 398 ProSitePatterns PPM-type phosphatase domain signature. 86 94 IPR000222 GO:0043169
Cmo17g00873 398 Gene3D - 34 363 IPR036457 -
Cmo17g00873 398 ProSiteProfiles PPM-type phosphatase domain profile. 57 362 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01722 Cmo-Chr1:12898714 Cmo17g00873 Cmo-Chr17:7972189 2.54E-75 dispersed
Cmo01g01724 Cmo-Chr1:12905977 Cmo17g00873 Cmo-Chr17:7972189 3.09E-29 dispersed
Cmo17g00873 Cmo-Chr17:7972189 Cmo05g01271 Cmo-Chr5:9862224 7.19E-38 dispersed
Cmo17g00873 Cmo-Chr17:7972189 Cmo08g00579 Cmo-Chr8:3546049 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00873 K17499 - csv:101214132 685.641