Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00874 ATGATTATCACTGTGAAGGATTCGACGATGGTGACTCCGGCGGAGGAGACGCCGCGCCGGACTCTCTGGAACTCGAACGTCGATCTGGTGATACCGAGTATACACACGCCGAGCGTCTACTTCTACCGCCCGACCGGCGCCTCCAATTTCTTCGACGGTCAGGTTCTCAAGGAAGGCCTAAGCAAAGCGCTGGTGCCGTTTTATCCAATGGCCGGACGATTGAGACGCGATGAAGACGGTCGTATCGAGATCTACTGTAATGCTGAAGGTGTGCTTCTTGTCGAGGCCGAAACCACGGCGGTTATCGACGATTTCGGTGATTTCGCCCCGACGTTACAGCTTCGGCAACTTATTCCAGCCGTCGATTACTCTGGCGGAATCGAATCGTATCCTTTGCTGGTGTTACAGGTGACACACTTCAAATGCGGCGGCGTTTCACTGGGCGTAGGAATGCAGCACCATTTAGCGGACGGCTTTGCCGGTCTCCACTTTGTGAATACCTGGTCCGACATGTCGCGTGGCCTCGACCTTAAGCTTCAGCCCTTCATCGACCGGACCCTACTCAGAGCGCGGGACCCACCTCAACCGGCATTCCGTCACGTCGAATACGAACCGGCTCCGCCCATGAAAACTCCGGTCCAGCCGAACTCGGAAGGAACCACCGTCTCTGTATTCAAATTCACCCGCGAGCAGCTGAATCTACTCAAAGCCAAATCCAAAGAAAACGGCAATACTATCAACTACAGTTCATATGAGATGCTTTCCGGCCACGTCTGGCGCTGCACGTGCAAGGCGCGTGACCTTCCCGAGGATCAGGAGACTAAGCTCTACATTGCCACCGACGGCCGTGCTCGGTTGCGCCCGCCGCTTCCCAACGGCTACTTCGGCAACGTTATCTTCACAACTACGCCGCTCGCCATCGCCGGTGAACTGATGTCGAACCCGACGTGGTTCGCTGCCGGAAAAATCCACGACGCCTTGGTTCGGATGGACAACGATTATTTGAGATCGGCTTTGGATTATCTCGAACTGCAGCCGGACTTATCGGCGTTGGTCCGTGGTGCTCATACTTTCCGTTGCCCCAATTTGGGAATCACGAGCTGGGTCCGGCTGCCTATCCACGACGCCGATTTTGGGTGGGGCCGGCCGATTTTTATGGGCCCCGGCGGAATCGCGTACGAGGGATTGTCGTTTATAATCCCGAGTGCGTCCGACGATGGCAGCTTGTCAGTGGCGATTTCGCTGCAGACTCCACATATGAAGGTGTTTGAGAAGCTGTTCTTCGATCTTTAA 1293 55.45 MIITVKDSTMVTPAEETPRRTLWNSNVDLVIPSIHTPSVYFYRPTGASNFFDGQVLKEGLSKALVPFYPMAGRLRRDEDGRIEIYCNAEGVLLVEAETTAVIDDFGDFAPTLQLRQLIPAVDYSGGIESYPLLVLQVTHFKCGGVSLGVGMQHHLADGFAGLHFVNTWSDMSRGLDLKLQPFIDRTLLRARDPPQPAFRHVEYEPAPPMKTPVQPNSEGTTVSVFKFTREQLNLLKAKSKENGNTINYSSYEMLSGHVWRCTCKARDLPEDQETKLYIATDGRARLRPPLPNGYFGNVIFTTTPLAIAGELMSNPTWFAAGKIHDALVRMDNDYLRSALDYLELQPDLSALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSASDDGSLSVAISLQTPHMKVFEKLFFDL 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 7979143 7981936 + CmoCh17G008740.1 Cmo17g00874 401257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00874 430 Gene3D - 210 430 IPR023213 -
Cmo17g00874 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 429 - -
Cmo17g00874 430 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 429 - -
Cmo17g00874 430 Gene3D - 1 205 IPR023213 -
Cmo17g00874 430 Pfam Transferase family 2 426 - -
Cmo17g00874 430 MobiDBLite consensus disorder prediction 198 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01531 Cmo-Chr1:11828449 Cmo17g00874 Cmo-Chr17:7979143 3.24E-17 dispersed
Cmo07g01203 Cmo-Chr7:6548378 Cmo17g00874 Cmo-Chr17:7979143 1.28E-109 dispersed
Cmo07g01204 Cmo-Chr7:6555172 Cmo17g00874 Cmo-Chr17:7979143 2.47E-110 dispersed
Cmo10g00039 Cmo-Chr10:194699 Cmo17g00874 Cmo-Chr17:7979143 8.01E-92 dispersed
Cmo12g01002 Cmo-Chr12:9350195 Cmo17g00874 Cmo-Chr17:7979143 3.32E-57 dispersed
Cmo16g00561 Cmo-Chr16:2741261 Cmo17g00874 Cmo-Chr17:7979143 2.57E-29 transposed
Cmo17g00874 Cmo-Chr17:7979143 Cmo08g00578 Cmo-Chr8:3539152 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00874 K13065 - csv:101214857 829.706