Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00881 | ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTGAACTTTCCACTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA | 1095 | 48.86 | MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKYLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPDGGDSSSSSSSNTLELLLHSSKFKDIIERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8019784 | 8024745 | - | CmoCh17G008810.1 | Cmo17g00881 | 401264 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00881 | 364 | CDD | AP2 | 151 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 347 | - | - | |
Cmo17g00881 | 364 | ProSiteProfiles | AP2/ERF domain profile. | 152 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | SUPERFAMILY | DNA-binding domain | 49 | 117 | IPR016177 | GO:0003677 | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 222 | 243 | - | - | |
Cmo17g00881 | 364 | PRINTS | Ethylene responsive element binding protein signature | 51 | 62 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | PRINTS | Ethylene responsive element binding protein signature | 192 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | Gene3D | AP2/ERF domain | 151 | 212 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | Gene3D | AP2/ERF domain | 50 | 118 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | SUPERFAMILY | DNA-binding domain | 151 | 212 | IPR016177 | GO:0003677 | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 255 | 283 | - | - | |
Cmo17g00881 | 364 | ProSiteProfiles | AP2/ERF domain profile. | 50 | 116 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 347 | - | - | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
Cmo17g00881 | 364 | Pfam | AP2 domain | 49 | 108 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | Pfam | AP2 domain | 151 | 202 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - | |
Cmo17g00881 | 364 | SMART | rav1_2 | 50 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | SMART | rav1_2 | 152 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo17g00881 | 364 | MobiDBLite | consensus disorder prediction | 223 | 243 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00480 | Cmo-Chr10:2144602 | Cmo17g00881 | Cmo-Chr17:8019784 | 3.58E-120 | dispersed | |
Cmo17g00881 | Cmo-Chr17:8019784 | Cmo07g00637 | Cmo-Chr7:2876799 | 3.23E-88 | dispersed | |
Cmo18g00973 | Cmo-Chr18:10751404 | Cmo17g00881 | Cmo-Chr17:8019784 | 3.11E-81 | dispersed | |
Cmo17g00881 | Cmo-Chr17:8019784 | Cmo08g00572 | Cmo-Chr8:3507877 | 1.10E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11415 | PF00847 | AP2 | 2.40E-13 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00881 | K09285 | - | csv:101206499 | 583.948 |