Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00881 ATGGCCAAGATCTCACATCCGCCGCACAAGAATTCCATTTCTACCACCGCTAATTCTCAGTCTTCTACAGTCCATCACAGCCAGAAGAAGGTACTCAAGCGTACGCGTAAGTCCACTCCTCGAGATGCTCCCGCTCAGCGTAGCTCTGTATACCGCGGAGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGACCTTGCTGCGCTCAAGTACTGGGGAACTGAAACTGTTCTGAACTTTCCACTATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGTCAATCAAGAGAGGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCGAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATCGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAGGAAGCTGCCACAGCTTACGACATGGCCGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTATATCAAATACCTCCGTCCTGAGGAACAAGATATCCCAAACAACAATAACCGTCCACCAAGCCCTAACGCCGGTAAAACGACTTCAGAATTGGACCCCAAATCCCTCCTTGAATTCACCTTTCCGTCCCAATGTTCGAGTTCCGACCAACCCATCTCCACGCCACCGCTGGGACCTGACGGCGGTGACTCCTCGTCGTCGTCGTCGTCGAACACGCTGGAGCTTCTACTCCATTCCTCGAAATTTAAAGATATAATAGAAAGAAAACCCACCGCCGACCCTCCACAGACGCCGCCGGAATCTGACCGGCCTCGCCGCTGTATTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGACGACATTGCCGAAGGCGACGACGGCATTTTTGGGTATCTAAATTCGTTTTTACCTTCATCAATTTTTCACTACGCACTCGATGCTTAA 1095 48.86 MAKISHPPHKNSISTTANSQSSTVHHSQKKVLKRTRKSTPRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKYLRPEEQDIPNNNNRPPSPNAGKTTSELDPKSLLEFTFPSQCSSSDQPISTPPLGPDGGDSSSSSSSNTLELLLHSSKFKDIIERKPTADPPQTPPESDRPRRCIPDDIQTYFDCTQDSDDIAEGDDGIFGYLNSFLPSSIFHYALDA 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8019784 8024745 - CmoCh17G008810.1 Cmo17g00881 401264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00881 364 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 347 - -
Cmo17g00881 364 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 SUPERFAMILY DNA-binding domain 49 117 IPR016177 GO:0003677
Cmo17g00881 364 MobiDBLite consensus disorder prediction 222 243 - -
Cmo17g00881 364 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Cmo17g00881 364 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Cmo17g00881 364 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Cmo17g00881 364 MobiDBLite consensus disorder prediction 1 51 - -
Cmo17g00881 364 MobiDBLite consensus disorder prediction 255 283 - -
Cmo17g00881 364 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 347 - -
Cmo17g00881 364 MobiDBLite consensus disorder prediction 8 26 - -
Cmo17g00881 364 Pfam AP2 domain 49 108 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 MobiDBLite consensus disorder prediction 299 319 - -
Cmo17g00881 364 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Cmo17g00881 364 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00480 Cmo-Chr10:2144602 Cmo17g00881 Cmo-Chr17:8019784 3.58E-120 dispersed
Cmo17g00881 Cmo-Chr17:8019784 Cmo07g00637 Cmo-Chr7:2876799 3.23E-88 dispersed
Cmo18g00973 Cmo-Chr18:10751404 Cmo17g00881 Cmo-Chr17:8019784 3.11E-81 dispersed
Cmo17g00881 Cmo-Chr17:8019784 Cmo08g00572 Cmo-Chr8:3507877 1.10E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11415 PF00847 AP2 2.40E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00881 K09285 - csv:101206499 583.948