Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00902 ATGGAGCTTGGCCTGAGCTTGGGCGATGCTCCCAAGCCCTTCCGCTTCGTTGAGAAGCAGCCGCCAGTAACGCCGCGGCAGCGGCGGATTTCCCGGCCTGATTTAGGGTTCTGCGTCGACTTATCGATTGGCCGTCCGGTCGCCGGAGAGAAAGAAGACGACGAAGAGAAGATCAATCAGAGAGATTATGAATCCGACGGTAATGAAGATCCACCGATTCAACTCGATCTTCTTCCTCATAATCCCGTTCCGCGGAACCTAACTAATCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGTGAAGATCGAACCGCATCGCCTAACAGTGCGGCGTCGTCGTTTCAGATGGAGTTTGGATTGTACGGCGGCGGAGGGAACATTTCTTGCCAGAGAGAACAAATGGAAAATGGCGTAATCGAATCTGAGAGAGCGTCTTCACGAGCGAGCGATGAAGATGAAAATGGATCCACGAGGAAGAAACTCAGACTCTCGAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCCAAACAGAAACTTGCACTCGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAACGATGCTGTGAAACATTAACAGAAGAGAACAGACGACTTCAAAAGGAGCTTCAAGAATTGAGAGCTTTGAAAACCACAGACTCATTTTACATGCAATTACCAGCCACAACACTCACCATGTGTCCTTCTTGTGAAAGAGTGACCTCAACATCAGCCGGCTCCAGCGGCGGCAAATCGACGGAGGCAGTTTCGAAACGATCTGGTTTCGCCATTACTGGGCGACCAAGCTCCTCCTCTTTCCCATTTTCTGCTTAA 939 49.31 MELGLSLGDAPKPFRFVEKQPPVTPRQRRISRPDLGFCVDLSIGRPVAGEKEDDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGGGGNISCQREQMENGVIESERASSRASDEDENGSTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTDSFYMQLPATTLTMCPSCERVTSTSAGSSGGKSTEAVSKRSGFAITGRPSSSSFPFSA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8159676 8161046 + CmoCh17G009020.1 Cmo17g00902 401285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00902 312 PANTHER PROTEIN, PUTATIVE-RELATED 109 292 - -
Cmo17g00902 312 CDD homeodomain 162 219 IPR001356 GO:0003677
Cmo17g00902 312 SMART halz 218 261 IPR003106 GO:0006355|GO:0043565
Cmo17g00902 312 Gene3D - 166 216 - -
Cmo17g00902 312 ProSiteProfiles 'Homeobox' domain profile. 158 218 IPR001356 GO:0003677
Cmo17g00902 312 MobiDBLite consensus disorder prediction 46 68 - -
Cmo17g00902 312 SUPERFAMILY Homeodomain-like 153 219 IPR009057 -
Cmo17g00902 312 Pfam Homeodomain 162 216 IPR001356 GO:0003677
Cmo17g00902 312 MobiDBLite consensus disorder prediction 148 167 - -
Cmo17g00902 312 SMART HOX_1 160 222 IPR001356 GO:0003677
Cmo17g00902 312 Pfam Homeobox associated leucine zipper 218 252 IPR003106 GO:0006355|GO:0043565
Cmo17g00902 312 PANTHER - 109 292 - -
Cmo17g00902 312 Coils Coil 224 254 - -
Cmo17g00902 312 MobiDBLite consensus disorder prediction 276 312 - -
Cmo17g00902 312 MobiDBLite consensus disorder prediction 1 113 - -
Cmo17g00902 312 MobiDBLite consensus disorder prediction 141 167 - -
Cmo17g00902 312 ProSitePatterns 'Homeobox' domain signature. 193 216 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00102 Cmo-Chr6:586773 Cmo17g00902 Cmo-Chr17:8159676 3.19E-95 dispersed
Cmo09g00319 Cmo-Chr9:1389769 Cmo17g00902 Cmo-Chr17:8159676 1.24E-61 dispersed
Cmo10g00385 Cmo-Chr10:1753130 Cmo17g00902 Cmo-Chr17:8159676 6.02E-49 dispersed
Cmo11g00348 Cmo-Chr11:1702662 Cmo17g00902 Cmo-Chr17:8159676 8.73E-56 dispersed
Cmo16g01173 Cmo-Chr16:8354962 Cmo17g00902 Cmo-Chr17:8159676 8.47E-69 dispersed
Cmo01g00217 Cmo-Chr1:961002 Cmo17g00902 Cmo-Chr17:8159676 4.27E-68 wgd
Cmo14g00412 Cmo-Chr14:1958755 Cmo17g00902 Cmo-Chr17:8159676 5.78E-108 wgd
Cmo17g00902 Cmo-Chr17:8159676 Cmo08g00548 Cmo-Chr8:3379157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11417 PF00046 Homeodomain 2.10E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00902 K09338 - csv:101221600 514.612