Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00925 ATGACAGACCCTAATCACTCCAATTCCTTCAACTTCATCCCTCTCCCATCCTCTCCGCCTTCAAATTCCGGTTTCTCCCAATGCCGCCACCGTCCTCCTTCTCCTCCGCCACCGCAAGCCCTCCCTCTCCTCAACACCTTCTCGGCGGAAACCACCGATCATCCCTCCTCCTCCACCAGCTACGAACACGACTCTCCGCCACTAGCTCTTGACTTCAGCCTCTCTTGCCCTAGCTCCAATCTCGACTACTCTCGTTCCATCTCGCCAGACCCCACTGGGAAAACCCTCGACGGCGATATTTCCGACCACCCTTTGCCGATCTCCGGCAAAGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGTTCTAAAGCATTCAATAGATACAATAATCTTCAGATGCACATGTGGGGGCATGGTTCGCAATACAGAAAAGGACCAGAGTCACTAAAAGGAACACAGCCAACGGCAATGCTTAAGCTGCCATGCTATTGCTGCGCGCCAGGGTGCAAACACAACATCGACAACCCTCGGTCGCGGCCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAACGAAAGCATGGAATCAAGCCGTTCACTTGTAGAAAATGCACCAAGGCCTTCGCGGTCAAAGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCGGACTTCAAACATAAGCGCTCTCTCAAGGACCACATTAAGGCCTTTGGTCGTGGCCATGGTGCACTCGGCCTTGACTACTTTGACGACGACAATGAACCCGGTTCTGAACTTGAACACGAACAACACGAACCTCAACTCCTCTTCCATCTCCATCAATGA 891 52.41 MTDPNHSNSFNFIPLPSSPPSNSGFSQCRHRPPSPPPPQALPLLNTFSAETTDHPSSSTSYEHDSPPLALDFSLSCPSSNLDYSRSISPDPTGKTLDGDISDHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLKLPCYCCAPGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPGSELEHEQHEPQLLFHLHQ 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8249266 8251543 - CmoCh17G009250.1 Cmo17g00925 401308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00925 296 Gene3D Classic Zinc Finger 190 263 - -
Cmo17g00925 296 Gene3D Classic Zinc Finger 127 150 - -
Cmo17g00925 296 SUPERFAMILY beta-beta-alpha zinc fingers 195 232 IPR036236 -
Cmo17g00925 296 SMART c2h2final6 128 150 IPR013087 -
Cmo17g00925 296 SMART c2h2final6 212 232 IPR013087 -
Cmo17g00925 296 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 2 284 - -
Cmo17g00925 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Cmo17g00925 296 PANTHER ZINC FINGER PROTEIN WIP2 2 284 IPR043584 GO:0003700|GO:0010468
Cmo17g00925 296 Pfam Zinc finger, C2H2 type 128 147 IPR013087 -
Cmo17g00925 296 SUPERFAMILY beta-beta-alpha zinc fingers 121 150 IPR036236 -
Cmo17g00925 296 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Cmo17g00925 296 MobiDBLite consensus disorder prediction 44 64 - -
Cmo17g00925 296 MobiDBLite consensus disorder prediction 1 66 - -
Cmo17g00925 296 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00447 Cmo-Chr14:2135405 Cmo17g00925 Cmo-Chr17:8249266 3.15E-105 wgd
Cmo17g00925 Cmo-Chr17:8249266 Cmo02g01279 Cmo-Chr2:7617958 3.26E-114 wgd
Cmo17g00925 Cmo-Chr17:8249266 Cmo20g00081 Cmo-Chr20:418949 2.00E-114 wgd
Cmo17g00925 Cmo-Chr17:8249266 Cmo08g00525 Cmo-Chr8:3286506 2.82E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11421 PF00096 zf-C2H2 0.0015 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00925 - - csv:101209911 502.286