Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00927 ATGTGCAAGGCACGTGCCTTTTCTCCCACCAGCTCATCCTCGAGTATTCAATTTGCGAAAATTTGTTCCCTTAAGTATTGTGTCGTCACCTTGGCTTTTCGCTTCAGTCCTTCGTCAATTGGGAAATTAGGGTTTACTTTTCCTTCTCGTGAAATGGCTATGGCTGGGCGTATCAGATCGATCATCCCTGTATTCAATCAGATTCTGAAATCGGAGTCACGGACTCAGAGACCTGCTCTTCAAAGAGCCCTACTTTGCCCCACGACTGCCAACTCCGAGTTCTCGAGGAACTATGCAACTGCTTCCAGTAAAAGTGAGGTCAAAGTTAAGGTTCCTCTGTCTTTGTTTGGGGGGTCTGGAAACTATGCCTCTGCTTTGTACATTGCAGCAGTAAAAGCTAATTCCTTGGATAAGGTTGAGACAGAGCTTTTTGACCTTGTTGAGGCTTCACAGAGAAGTGCCACCTTTTCTCAGTTCATGAGAGATCCCTCTGTCCCTGCAGATACTAGGGTCAAGGCTATTACTGATATTTGCACAGCTGCTAAATTTTCAGAAGTTACAAAAAACTTTTTGGTTGTACTGTCTGAATATGGAAGGCTGAAATACATAGACAGCATTGCAACGAAGTTTCAGGAGTTGACAATGGCTCATAGAGGAGAGGTGAAGGCCATTGTGACTACAGTTATTCCCCTCCCTGCTGAAGAAGAGAAAGAACTGAAAGAGACCCTGCAGGATATTATCGGACAGGGGAAAAAGGTCATCCTTGAACAGAAGGTTGATCCAAGTATTCTCGGCGGGCTAGTCGTAGAATTTAGCGAAAAACTGTTGGACGTGTCCATTAAGACCAGAGCAGAACAGATGGAGAGGTTCTTGCGAGAACCTGGGAGCCTCGACAACCTCTGA 903 45.4 MCKARAFSPTSSSSSIQFAKICSLKYCVVTLAFRFSPSSIGKLGFTFPSREMAMAGRIRSIIPVFNQILKSESRTQRPALQRALLCPTTANSEFSRNYATASSKSEVKVKVPLSLFGGSGNYASALYIAAVKANSLDKVETELFDLVEASQRSATFSQFMRDPSVPADTRVKAITDICTAAKFSEVTKNFLVVLSEYGRLKYIDSIATKFQELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDIIGQGKKVILEQKVDPSILGGLVVEFSEKLLDVSIKTRAEQMERFLREPGSLDNL 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8264452 8269691 + CmoCh17G009270.1 Cmo17g00927 401310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00927 300 Pfam ATP synthase delta (OSCP) subunit 120 289 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PANTHER ATP SYNTHASE DELTA CHAIN 86 293 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 Gene3D - 118 211 IPR026015 -
Cmo17g00927 300 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 86 293 - -
Cmo17g00927 300 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 121 290 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 Hamap ATP synthase subunit delta [atpD]. 114 293 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PRINTS ATP synthase delta subunit signature 199 213 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PRINTS ATP synthase delta subunit signature 188 199 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PRINTS ATP synthase delta subunit signature 251 266 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PRINTS ATP synthase delta subunit signature 118 137 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 PRINTS ATP synthase delta subunit signature 266 284 IPR000711 GO:0015986|GO:0046933
Cmo17g00927 300 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 119 220 IPR026015 -
Cmo17g00927 300 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 253 272 IPR020781 GO:0015986|GO:0016020|GO:0046933
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo14g01022 Cmo17g00927 CCT
Cmo01g00234 Cmo17g00927 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01238 Cmo-Chr9:10615482 Cmo17g00927 Cmo-Chr17:8264452 2.53E-12 dispersed
Cmo01g00234 Cmo-Chr1:1052110 Cmo17g00927 Cmo-Chr17:8264452 1.25E-109 wgd
Cmo14g01022 Cmo-Chr14:5566786 Cmo17g00927 Cmo-Chr17:8264452 1.17E-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00927 K02137 - csv:101206351 368.237