Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00938 ATGGCGATGACTAGGGTTCATGAGCCATCGCGATCCTTAGCAGGTAATACATGCACCATTCGGCTGACTGAAATTTTCGGGCGAGCGACCAAGTCTATTTTGGGCTTCTTTCTCATGATGGGTCTCTGCAATGGCGTGCATTACCTTTTGAGACCTTTTTCTCAACCTCGCACTACTTCTGATACGATCGTTGGTTTGGTTGTTGGAAACTTCATGAGGAAAGAACTCGATCTGTCAATACATAAGACGCTGCGTTATATTGTTGACTTTGGTATGACATGCTATATGTTTGTGCTGGGATTGGAGATGGATCCATGTGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCCGGAATGATTTCAACACTCATCTTAGCCTGTTCCACAATCCCATTTATTAGCTTTTCGAAGTCGAAAGAGATCAGTTTCATCCTCTCGCTCTCAACTGTTCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATCACCAATCTTAAAATAGGCAGGTCGGATATAGGCCGACTTGTTATTGCTGCTGGAATGCATTCTGATTTTATATCCACTCTAGCAATCTGTATAGGCTATCTATTTTGCCAATGCCAAGAGACGCGTCTCTCCATTATAAATGGTTTTCAATTAGGTTTTGTTCTATTGATCCAGATGATAATGGCGGCGAAGGTTTCACCAATATTCATGAACTGGGTGAATAACGAAAACCCCGAGGGTAAACCTATGAAGGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTATAATTGGTTACAACCCGACGCTCAGTGCATTCTTGGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACTGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGTTGAGTGACTTCGAGCCTGGACAAATAATAACATGGGTCAGATTACTTCTGCTTTTTGCTATTGTAACCGTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCTGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCCATATCTGCAAAAATAGCTGGAAAGATATCTACATCTACGAGCATTGCGATGGTATTTGTAATCTTCTTCACAGTCGTGCATGCTCCAAAAGTTGTAGCTCATATAATTAGAAGGGCGAGGAAACGCACACCTACACATCGAATGGCTCTCGAATTGCTTGACCCATCAAGTGAGCTTAAGATCTTGTTATGTATACATGGACCTCATAACACTGGAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACGGCTAACCCTGGAGTTGTTGTATATGTCACAGACATGATTGAACTTACAGATGAAATAGCAGCCACGTTAGTGCAGGGTGAAGGAGTGGACACTGTAACTGTAACCCACACAGGAGTGACACAAATGAGAGATCAAGTTACTACTGCATTTCAGAGATATGTAGATGAAAATGGAGATGGAATTACCCTTAGAAGAATGTTGGCTCTCTCAGCATTCAATTGTATGGCACAAGACATTTGCATTTTAGCGGAGGACTTGTTGGGTGCTCTTATCATACTGCCATTCCACAAGAACCAGCGCGGAGATGGGTCGTTGAGCGAGGGCCAAGCAGGTTTCCGCTATGTGAACCGCAAGGTTATCAGACACGCCCCTTGTTCCGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTACGTAACCCTGAATGTGGCAGTGATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGCCTACGCTGGTCGAGTAGCTAGACATCCCGGAGTTAAACTCTCTGTGATTAGATTCTTGGTGGATGCTGATGCAGAAAATGCTGCAAGAAGAGCTGGGACATACAGGATCAGTGTTGCTGAGCAGGAAGAGGAAATGAGACAAGACGACGAATGCTTTGCTTATTTTTACGAACGACACGTGGCTGGTGGGCACGTCGCTTACGTTGAAAAACACATGGCCAGTTCCGCAGAGACGTATTCTACTTTGAAATCACTGGAAGGTCAATACACTCTCGTAATCGTAGGTCGAGGTGGGGGAGTGAACTCGGTGTTAACTTACGGGATGAATGATTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGACGTTCTTTCCGGGTCTGAATTCTCCGCCAAGACCTCGGTTTTGATCATCCATCAACACAATCTAAAAGGTGAACTAGATGGACTTGATGATGATTTTTCAATAATGTAG 2373 44.46 MAMTRVHEPSRSLAGNTCTIRLTEIFGRATKSILGFFLMMGLCNGVHYLLRPFSQPRTTSDTIVGLVVGNFMRKELDLSIHKTLRYIVDFGMTCYMFVLGLEMDPCVLFKAPTRDAKVAYAGMISTLILACSTIPFISFSKSKEISFILSLSTVLSSTASPVLTRLITNLKIGRSDIGRLVIAAGMHSDFISTLAICIGYLFCQCQETRLSIINGFQLGFVLLIQMIMAAKVSPIFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTIIGYNPTLSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLSDFEPGQIITWVRLLLLFAIVTVGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAISAKIAGKISTSTSIAMVFVIFFTVVHAPKVVAHIIRRARKRTPTHRMALELLDPSSELKILLCIHGPHNTGAAINIMEISRGTANPGVVVYVTDMIELTDEIAATLVQGEGVDTVTVTHTGVTQMRDQVTTAFQRYVDENGDGITLRRMLALSAFNCMAQDICILAEDLLGALIILPFHKNQRGDGSLSEGQAGFRYVNRKVIRHAPCSVGILVDRGLGSVEKISRSYVTLNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHMASSAETYSTLKSLEGQYTLVIVGRGGGVNSVLTYGMNDWQQCPELGPIGDVLSGSEFSAKTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8326977 8330934 - CmoCh17G009380.1 Cmo17g00938 401321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00938 790 Pfam Sodium/hydrogen exchanger family 43 419 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo17g00938 790 Gene3D - 29 429 IPR038770 -
Cmo17g00938 790 Gene3D - 444 743 - -
Cmo17g00938 790 PANTHER CATION/H(+) ANTIPORTER 28 20 787 - -
Cmo17g00938 790 PANTHER CATION/H + ANTIPORTER 20 787 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00509 Cmo17g00938 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00938 Cmo-Chr17:8326977 Cmo20g01059 Cmo-Chr20:9767041 1.17E-112 dispersed
Cmo17g00938 Cmo-Chr17:8326977 Cmo08g00509 Cmo-Chr8:3190323 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00938 - - csv:101211645 1387.47