Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00945 ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCGAAAACTAAGAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTACGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAAGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGGAACCCACCCCCGAGGCCCCCCCACAGAACTTCACTTACCAGAGAGAGGACCAATCAAACAGATCATCTCCAACAAAGCAAGCTATTTCCTTCATAACTCAAGATTCGGACGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGCGTTCCCATCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGCTGTCTGAGGAGTTTCTAATGATGATGATATTGAATGAACAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCGGGAACTGTGGAACCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCGTTGGAAGAAAATTGTAAATCAAGTCAGACTGAACTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTAGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCAATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGGTAATTTGTCGGGAGAAGTTGCTGAAATTATATTTGATTACAACAATGCGTGCTAAGGATTTCAAAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGTATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAAGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATACGAACATCGTCAGCGTCAGATAAATACCATTGCAAGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAGTCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAACTGGAATATAGTGGGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGCAAGCCGATGTTGA 3339 41.06 MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPYKHPKDEIERLRAQILELEVSASQKRLTKSEIEKNISQKRNTLRQCLDKLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKEPTPEAPPQNFTYQREDQSNRSSPTKQAISFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFELSEEFLMMMILNEQVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSSQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLADQATNFNVQRFNCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKVICREKLLKLYLITTMRAKDFKELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKYAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGASRC 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8374616 8393140 + CmoCh17G009450.1 Cmo17g00945 401328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00945 1112 MobiDBLite consensus disorder prediction 491 510 - -
Cmo17g00945 1112 Coils Coil 901 938 - -
Cmo17g00945 1112 Coils Coil 703 737 - -
Cmo17g00945 1112 CDD ABC_SMC5_euk 23 180 - -
Cmo17g00945 1112 Coils Coil 248 296 - -
Cmo17g00945 1112 CDD ABC_SMC5_euk 985 1087 - -
Cmo17g00945 1112 Coils Coil 401 428 - -
Cmo17g00945 1112 Gene3D - 24 216 IPR027417 -
Cmo17g00945 1112 Coils Coil 661 695 - -
Cmo17g00945 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 292 IPR027417 -
Cmo17g00945 1112 MobiDBLite consensus disorder prediction 484 510 - -
Cmo17g00945 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1063 IPR027417 -
Cmo17g00945 1112 Coils Coil 329 359 - -
Cmo17g00945 1112 Pfam RecF/RecN/SMC N terminal domain 25 1052 IPR003395 -
Cmo17g00945 1112 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1107 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cmo17g00945 1112 Gene3D - 906 1071 IPR027417 -
Cmo17g00945 1112 Coils Coil 195 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00367 Cmo-Chr4:1774556 Cmo17g00945 Cmo-Chr17:8374616 4.82E-07 dispersed
Cmo17g00945 Cmo-Chr17:8374616 Cmo17g01279 Cmo-Chr17:10040448 4.42E-08 dispersed
Cmo17g00945 Cmo-Chr17:8374616 Cmo08g00256 Cmo-Chr8:1580180 1.68E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00945 K22803 - csv:101210248 1902.1