Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00945 ATGGCGGAAGCCAAGCGTCGCGCAAAGCGCCCTAGAATTACGAGGGGGGACGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACTTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCCAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCGACCAGTGTTGGAGCATATGTGAAGCGCGGGGAGGAGTCTGGTTATGTCAGAATAACCTTGAGAGGGAATACTAAAGAGGAGAATATTACAATTACACGTAAAATGGACACACACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCAAAAAAGGATGTAGCTGGAATCATTCAAAGTTTTAACATTCAAGTTAATAACTTGACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCCGTCCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGCGATCCTCAACTTCCAATCCTACATCGTGTACTTGTTGAGAAAAGCCATGACATAAAAAATATAGAACGAGCTGTTGAGAAAAATGGAGACACCCTAGATCAGCTAAAGGCATTAAATGTCGAGCAGGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGAAGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAGCTGCCATGGCTGAAGTATGACATGAAAAAGGCTGAATACATGGAAGTTAAGGAAAAGGAAAAGGAGGCAAAAAAGAAGTTAGATGAAGCTGCAAATACTTTGAATGATTTAAAGGAGCCAATTGAGAAACAAAGAAAGGAGAAGGCAAAGTTGGATGCGAAAACTAAGAAGTATAGCACTCTCATTAATAATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAATCATTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACAAGCTAAAGAGGAACTTGAAGCTGCTGAATTGGAACTTCAGAATTTGCCTCCTTACAAACATCCCAAGGACGAGATTGAACGGTTGCGCGCTCAAATTTTGGAGCTGGAAGTTTCAGCAAGTCAGAAGAGACTTACGAAGTCAGAGATTGAAAAAAATATATCCCAAAAAAGAAATACTTTGAGGCAGTGCTTGGATAAGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAGAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAATTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCAAATCGGACTCATGCTGACTACTTAGAAGGTCATATCCCATCATATGCCTGGAAGGAACCCACCCCCGAGGCCCCCCCACAGAACTTCACTTACCAGAGAGAGGACCAATCAAACAGATCATCTCCAACAAAGCAAGCTATTTCCTTCATAACTCAAGATTCGGACGATCGTGACATAATGGTAAAAAACTTGGGTTCATTTGGCGTTCCCATCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGCTGTCTGAGGAGTTTCTAATGATGATGATATTGAATGAACAGGTTCGTGCATTTGGCATATATTCCCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAGCATTCATATATTGGCTCAAAGGTAACTGATCAGAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATGTCGGGAACTGTGGAACCAGTTGATCGCTCACGTCTTCTCTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGGTCCAGGAAAAATGAGCTAGAAGAATCTATTTCTGCGTTGGAAGAAAATTGTAAATCAAGTCAGACTGAACTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGATGATATTTTAAATACTGTGCAACATGAGAAGAGAAAACGCCGTGAAATGGAAAATCGCATTGATCAAAGAAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTAGATACTGTTGTGGCCAAGCTTGCCGACCAAGCTACAAATTTTAACGTTCAAAGGTTCAATTGTGCAATTGAAATTAAGCATTTGCTTGTTGAGGCCGTTTCCTATAGACAGAACTTGACTAAGAGCCATATGTCCTCCATTGAAATTGAAGCAAAGGTAATTTGTCGGGAGAAGTTGCTGAAATTATATTTGATTACAACAATGCGTGCTAAGGATTTCAAAGAATTGGAGGTAAATCTGAAGCAGCATGAAAAGTTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTCGAGGACTATCGACAGCAACTCTCAGTTGCCAAGAAGTATGCAGAATCTATTGCTGTGATCACACCTGACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAAGAATTGGAAGCTGCTATTCAAGATAATATTTCTCAGGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATACGAACATCGTCAGCGTCAGATAAATACCATTGCAAGAAAACTAGAAGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACTTTAAGAAAACTTGTTTCTCAGATAAATGAGACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTCGATCAATATGGGATTCTTATTAAAGTGAAGTTCAGACAAGCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAGTCGGGAGGGGAACGCTCGGTGTCGACAATCTTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAGTTGGTGAGAGCTGCCAGCCAAACAAATACACCACAGTGCTTCCTACTCACTCCAAAGTTACTTCCAGAACTGGAATATAGTGGGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACATTAATGAACTACGTTGGAGCAAGCCGATGTTGA 3339 41.06 MAEAKRRAKRPRITRGDDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEENITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQSFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRVLVEKSHDIKNIERAVEKNGDTLDQLKALNVEQEKDVERVRQREELLKKVESMKKKLPWLKYDMKKAEYMEVKEKEKEAKKKLDEAANTLNDLKEPIEKQRKEKAKLDAKTKKYSTLINNNHKKRMELQETENHLGVQVQGKLKEMEDLRKQEESRQQRILQAKEELEAAELELQNLPPYKHPKDEIERLRAQILELEVSASQKRLTKSEIEKNISQKRNTLRQCLDKLKDMENTNTKLLQALRNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYAWKEPTPEAPPQNFTYQREDQSNRSSPTKQAISFITQDSDDRDIMVKNLGSFGVPILNYVGGERRTNQHFELSEEFLMMMILNEQVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGTVEPVDRSRLLLCNLDAGEIDGLRSRKNELEESISALEENCKSSQTELRLIEDEEAKLRKHRDDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLADQATNFNVQRFNCAIEIKHLLVEAVSYRQNLTKSHMSSIEIEAKVICREKLLKLYLITTMRAKDFKELEVNLKQHEKFALQASVQFEYCKKEVEDYRQQLSVAKKYAESIAVITPDLEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINTIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQYGILIKVKFRQAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSGACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGASRC 1112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8374616 8393140 + CmoCh17G009450.1 Cmo17g00945 401328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00945 1112 MobiDBLite consensus disorder prediction 491 510 - -
Cmo17g00945 1112 Coils Coil 901 938 - -
Cmo17g00945 1112 Coils Coil 703 737 - -
Cmo17g00945 1112 CDD ABC_SMC5_euk 23 180 - -
Cmo17g00945 1112 Coils Coil 248 296 - -
Cmo17g00945 1112 CDD ABC_SMC5_euk 985 1087 - -
Cmo17g00945 1112 Coils Coil 401 428 - -
Cmo17g00945 1112 Gene3D - 24 216 IPR027417 -
Cmo17g00945 1112 Coils Coil 661 695 - -
Cmo17g00945 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 292 IPR027417 -
Cmo17g00945 1112 MobiDBLite consensus disorder prediction 484 510 - -
Cmo17g00945 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1063 IPR027417 -
Cmo17g00945 1112 Coils Coil 329 359 - -
Cmo17g00945 1112 Pfam RecF/RecN/SMC N terminal domain 25 1052 IPR003395 -
Cmo17g00945 1112 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1107 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cmo17g00945 1112 Gene3D - 906 1071 IPR027417 -
Cmo17g00945 1112 Coils Coil 195 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00945 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 1902.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00367 Cmo-Chr4:1774556 Cmo17g00945 Cmo-Chr17:8374616 4.82E-07 dispersed
Cmo17g00945 Cmo-Chr17:8374616 Cmo17g01279 Cmo-Chr17:10040448 4.42E-08 dispersed
Cmo17g00945 Cmo-Chr17:8374616 Cmo08g00256 Cmo-Chr8:1580180 1.68E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g00945 . 4 1112 Structural Maintenance of Chromosomes family AT5G15920 62.6 0.0e+00 1271.1
Cmo04g00367 . 13 1052 Structural Maintenance of Chromosomes family AT5G07660 62.8 0.0e+00 1241.5
Cmo04g00367 . 10 1052 Structural Maintenance of Chromosomes family AT5G61460 65.7 0.0e+00 1308.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g00945 Cmo_Chr17 FPKM 279.716553 310.522644 276.87204 282.910156 69.439125 59.509357 62.742752 659.626953 719.896851 676.882874