Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00973 ATGGATGATAGCTGTGCGGTGTGTGCCGATGCCCTTGAATGGGTTGCCTATGGCTCTTGCGGCCATCGGGATGTTTGCTCCACCTGCGTTGCTCGCCTTCGATTCATTTGCGGTGATCGCTGTTGTTGCATCTGCAAGTCCGAATCCACCGTCGTCTTCGTCACTAAGGCCTTAGGAGATTATACAAGGACTATTAACGACTTCACAGTCTTTCCTTCTGAACCTAGAGAAGGTCGTTGTGGATCCTATTGGTATCATGAAGACACGCAAGCATTTTTTGATGACGTTGACCACTACAAGATGATAAAAGCAATGTGCAGGTTGTCATGCAGTGTGTGTGATAAGATAGGTGAAGATCAACCAAATGATGGCTCAAAGCGCCGAGGAAGATTTCGGAATATTGAACAGCTAAAGGGTCATTTGTTTCATCGACATAAGTTGTTTATGTGCAGCCTTTGTTTGGAAGGAAGGAAGATTTTTATTTGTGAACAAAAGCTGTATAATAGAGCACAACTGAATCAGCACATACACACTGGTGACTCTGAGGTGGACGGAAGTGAGAGTGAGAGAGGTGGTTTCACCGGACACCCAATGTGTGAGTATTGCAGGACTCCTTTTTACGGAGATAATGAGCTGTATACTCATATGTCAACAGAACATTATACATGTCATATATGCCAAAGGCTCCATCCTGGACAGTATGAATATTATAAGAATTATGATGACCTGGAGATCCATTTCCGACAAGCACATTTTCTTTGTGAAGATGAAACCTGCCTTTCTAAGAAGTTTATAGTGTTCCAATCTGAATCAGAAATGAAGAGGCATAATACTATTGAACATGGTGGCAAGCTATCTCGATCAAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTCGATATCGAAGAAGTAATGACCAAGATAATCGCCGTGGTAGACGAACATTTCGTCGTGATTCTTCTGACGACCTACTTTCTGTAGCCATTCAAGAAAGCTTTGAAACAGCCAATGTTGATGACACCACTCATGACCCACTACCTAGCGGTCAAGTAGACTCAGATCAGGGAAATATAAGCAACATTGATCCCTTAATTGAACCATTTGAATCATTATCCACAACAGATGCTGAATCAGCTTCTAGATACCTTCAAGCATTGGGTCATTCTAGGAATTCCCAATTGGAGCAATCATCCTTTCCACCCCTTTCAACAGCATCTAGCAGTAGTCATCCAAAACCCATTCAGGACAAAGATAATAACAGTATGGCTGCTCATCTTCGCCGCAAGAGGAATGTGACCGTAATAAATCCTGCCCAAGGTTGGCCAAAATCAAGTCGTGCGCCTGTGGTACCATCAAATAAATCCTCTCAAGCTTGGCCTGCAATAAATGTCAATCATACGGCATCGAGCAGTTCTGGGCAGACTAAGGGTGCTGTGACCATCAGTAATGGCTCTTCGGGCTCTGGTTACTCAAATGCTGCTCAGATGCATGTGAAGGGTAAGACTAGTTCTTCGAGTGGATCGGGTAGTAGTAGCAGTAGGATCAGCCACTCTGCTTCTGCTCCCAATCTCACCGACATGGCTTATACTGAACCCTCGGTTAATGATTTCCCTCCTGTATCTGCGGCACAGGCACGGAAGGTGCCCTCAAGTAGCCAGAGTTCGATGAACACGGAAGATGTCCAGACAGCAAACAAATCTCTAGTTGAAAAGATACGTGCTGCACTTGATTTTGACCAAGATAGATATGCCATTTTTAAAGATATATCTGCACAATATCGTCAAGGTCAGATCGACCCGGAAATGTACCTAGACTGTGTGCAGCAGTTCGGTTTGTCACATCTTGTGCTTGAACTGGCTAGGCTGTGTCCTGATGCTCAGAAACAGAAAGAACTTGTGGGGATCTATAATGCTAGTTTACAGAAAGAAGTGATCCAAGAAAATGGTAGGGCTCAAGATAGCATTCAAATTAAAGACAAGGATAAGGGAAAGAAGGGTAAAGGGAAGTCTACAGATGTTAAAGACAGGAGTTCAAAGGACAGTTCAAAGGACAGATTAGCAGACGGTATCTTGAGCAGTGTTCGGGAGCTGCAGTCAAGTCTCAGGCCATTGGAGGAAGATGTTGAGGTATTATCGAAGGGTGAGTACCGTGCTTTGAAAGGCAAAACGAAGATATCATCTGATGACCAGCAAAGTGGGACAGGAGGACAAAACAGACAAACGTCTACTGGACTATCGAACCACCAAAGCACAGGGGATGGAGATGGTGGGGGGAGCAAGCAAAGAAAGAAAACCTCCAAGTTCCATAGAGTTCGTTTAGGCGATGGTTCGGTTGCTGCACTCTTAGATTTAAAAAACTCCAACCCTGCTTCAGACTCGGACCCATCCGAAAGAGTCGAGGATGGGAACAATACCGCTGGGGCAGTGCCTGTTCGGGGTGTGTGGCGAAACGGTGCTCAGAGGCTCTTCTCCTAG 2478 44.87 MDDSCAVCADALEWVAYGSCGHRDVCSTCVARLRFICGDRCCCICKSESTVVFVTKALGDYTRTINDFTVFPSEPREGRCGSYWYHEDTQAFFDDVDHYKMIKAMCRLSCSVCDKIGEDQPNDGSKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKIFICEQKLYNRAQLNQHIHTGDSEVDGSESERGGFTGHPMCEYCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEIHFRQAHFLCEDETCLSKKFIVFQSESEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRRSNDQDNRRGRRTFRRDSSDDLLSVAIQESFETANVDDTTHDPLPSGQVDSDQGNISNIDPLIEPFESLSTTDAESASRYLQALGHSRNSQLEQSSFPPLSTASSSSHPKPIQDKDNNSMAAHLRRKRNVTVINPAQGWPKSSRAPVVPSNKSSQAWPAINVNHTASSSSGQTKGAVTISNGSSGSGYSNAAQMHVKGKTSSSSGSGSSSSRISHSASAPNLTDMAYTEPSVNDFPPVSAAQARKVPSSSQSSMNTEDVQTANKSLVEKIRAALDFDQDRYAIFKDISAQYRQGQIDPEMYLDCVQQFGLSHLVLELARLCPDAQKQKELVGIYNASLQKEVIQENGRAQDSIQIKDKDKGKKGKGKSTDVKDRSSKDSSKDRLADGILSSVRELQSSLRPLEEDVEVLSKGEYRALKGKTKISSDDQQSGTGGQNRQTSTGLSNHQSTGDGDGGGSKQRKKTSKFHRVRLGDGSVAALLDLKNSNPASDSDPSERVEDGNNTAGAVPVRGVWRNGAQRLFS 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8500242 8505493 - CmoCh17G009730.1 Cmo17g00973 401356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00973 825 MobiDBLite consensus disorder prediction 336 361 - -
Cmo17g00973 825 PANTHER ZINC FINGER PROTEIN 598 1 823 IPR044288 GO:0061630|GO:0072344
Cmo17g00973 825 SMART c2h2final6 108 145 IPR013087 -
Cmo17g00973 825 SMART c2h2final6 252 281 IPR013087 -
Cmo17g00973 825 SMART c2h2final6 221 251 IPR013087 -
Cmo17g00973 825 SMART c2h2final6 197 220 IPR013087 -
Cmo17g00973 825 CDD RING-HC_ZNF598 5 46 IPR041888 -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 336 363 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 390 419 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 304 319 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 298 319 - -
Cmo17g00973 825 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 546 563 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 433 563 - -
Cmo17g00973 825 PANTHER EBR1 1 823 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 447 531 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 654 688 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 390 417 - -
Cmo17g00973 825 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 648 688 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 722 825 - -
Cmo17g00973 825 MobiDBLite consensus disorder prediction 726 757 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00973 K22381 - csv:101214376 1373.61