Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01008 ATGAAAGATACCGGACCTCTGGACTTCAGCGCCGAAAGAGTTCTCGCAAAGGAGTTCCTTGCGAACTTCGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATCCTGCAAGATGTTGCAAATCGCAGAGTCCGTGCAATTCAAATCGATCTCGAGGATCTCTTTAATTTTAAGGACTTGGACGAGGATTTCCTCAAACGTATTACAGAAAACACCCGGCGATATATTGGAATTTTTGCCGATGCTATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTGTAGATGATGATCACGACATACTAATGACACAAAGGTCTGATGATGGACCTGATACTGTCGATAACCCTGACCCACGCCAAAAAATGCCGCCAGAAATCAAACGATACTTTGAAGTTTACATTAGAGCACCTTCAAAGGGCCGTCCGTTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTTGTGAGAATATCTGGTATTGTGACACGCTGTTCAGATGTTAAGCCGTTGATGCAGGTGGCAGTTTATACATGCGAAGACTGTGGTTTTGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACTTAATTCTTCAACTCAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAACTTCAAGAGTTAGCTGAGCATGTTCCGAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTATCAGGAATTTTTCTGCCCATTCCTTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCAATCACCCATTTCAAGAAAAAATATGAGGAATACGAACTTCGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGTGATATTTACAACAAACTGGCACGATCCTTGGCACCTGAAATTTTTGGTCATGAAGATATTAAAAAAGCTTTACTGCTTCTTCTTGTTGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTAATGGGTGATCCTGGTGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACGACTGGCAAAGGTAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTTCTTGAAGGAGGGGCATTGGTGTTAGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACCGTGAGCATTGCCAAGGCTGGAATCACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTCCGTAGAACTCCTGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTCGATCTTCTTTGGTTGATCCTAGATCGAGCTGACATGGATAATGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCTCTTGGCTTCACCCCTCTTGAATCATCTGTTCTTCGAGCTTATATTTCCGCCGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATCCGACAGGAAGAAGCTAAATCTAACACTCCCCATTCATATACCACAGTGAGAACTCTACTAAGCATTCTTCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCCGAGACTGTGGCCCAAAGTGATGTTGATGAGGCTCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGATGACCGTCAAAAGTCTGGTCTAGATGCTATCTCAGATATCTATTCAATCTTGCGCGATGAAGCTGCCAGAACTAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATTTCCAGGAAGGGATACAGCGAAGCTCAACTAAAAGAATGTTTGGAGGAGTATGCTGCCTTGAATGTGTGGCAAATACATCCACACACCTTTGACATTCGGTTTATAGATGCTTGA 2166 43.81 MKDTGPLDFSAERVLAKEFLANFADANGEAKYLNILQDVANRRVRAIQIDLEDLFNFKDLDEDFLKRITENTRRYIGIFADAIDELMPEPTEAFVDDDHDILMTQRSDDGPDTVDNPDPRQKMPPEIKRYFEVYIRAPSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8664918 8670779 - CmoCh17G010080.1 Cmo17g01008 401391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 370 385 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 430 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 458 471 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 482 494 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 517 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 SMART mcm 142 641 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 ProSitePatterns MCM family signature. 438 446 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cmo17g01008 721 Gene3D - 314 646 IPR027417 -
Cmo17g01008 721 ProSiteProfiles MCM family domain profile. 329 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Cmo17g01008 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 650 IPR027417 -
Cmo17g01008 721 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 39 699 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 Gene3D - 12 103 - -
Cmo17g01008 721 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 39 699 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 SUPERFAMILY Nucleic acid-binding proteins 16 297 IPR012340 -
Cmo17g01008 721 CDD MCM7 332 639 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 Pfam MCM N-terminal domain 17 135 IPR027925 -
Cmo17g01008 721 Pfam MCM P-loop domain 317 539 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cmo17g01008 721 Pfam MCM OB domain 146 276 IPR033762 -
Cmo17g01008 721 Gene3D - 173 227 - -
Cmo17g01008 721 Gene3D - 146 274 IPR012340 -
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 123 135 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 161 172 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 179 190 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 196 208 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cmo17g01008 721 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 288 298 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00117 Cmo-Chr7:655383 Cmo17g01008 Cmo-Chr17:8664918 5.88E-109 dispersed
Cmo11g01110 Cmo-Chr11:6215415 Cmo17g01008 Cmo-Chr17:8664918 4.54E-100 dispersed
Cmo17g01008 Cmo-Chr17:8664918 Cmo19g00696 Cmo-Chr19:7351871 1.01E-102 dispersed
Cmo17g01008 Cmo-Chr17:8664918 Cmo08g00461 Cmo-Chr8:2850680 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01008 K02210 - csv:101219064 1391.71