Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo17g01031 | ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGTACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGCTCAAAGCGCTCTTCAGATTACGCTCCTCTTAGCACAGAAGATCCAGGACCTTCGAGCAGTGATGCATTGATGGTGGGTCTGCCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACACCAAATTCGTAGGAAGATGGCAGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGAATACGATTGAGGCGCTTACGCAAGAAATTACCAATCTTTTGAAAGCCTCTGAGAAGAGGTTGAAGAGAATTTCTTGTACTGGGTCTTCAGAGGATATTAGCATCAGAAAAAATGTACAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCAATGGATCTTCGTAGAAGACAGTCAATGTATCTGAAACATCTGCAGCAGCAAAAGGAGGGGCATGATGGAATTGATTTGGAGATAAATTTGAATGGAAGCAGAACTCTACAGGATGATGACCGATATGATGAATTTGGAACCAATGAACACCAAACGATGACATTTGGAATGGATGCGCAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTGAAATCAGTGAATGAACTCGCCCAAATCATGAAGGATCTCTCAACCCTTGTTATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGCTTCAGTTGAAGAGGGCTATAAGCAGCTTCAAAAGGCAGAGAAGAGTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACGGTGCTGGTTATTATGTGTTTCATAATGCTGGTTCTGTTGATACTGAAGGAGATAATTATGTAA | 969 | 43.34 | MATRNRTAQFRRYRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSDYAPLSTEDPGPSSSDALMVGLPPAWVDDSEEITVNIHQIRRKMAELVKAHSKALMPSFADGKEDQNTIEALTQEITNLLKASEKRLKRISCTGSSEDISIRKNVQRSLATELQNLSMDLRRRQSMYLKHLQQQKEGHDGIDLEINLNGSRTLQDDDRYDEFGTNEHQTMTFGMDAQHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAASVEEGYKQLQKAEKSQKNGGMVKCATVLVIMCFIMLVLLILKEIIM | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 8784234 | 8787939 | - | CmoCh17G010310.1 | Cmo17g01031 | 401414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo17g01031 | 322 | Pfam | SNARE domain | 262 | 314 | IPR000727 | - | |
| Cmo17g01031 | 322 | SUPERFAMILY | t-snare proteins | 72 | 281 | IPR010989 | GO:0016020|GO:0016192 | |
| Cmo17g01031 | 322 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 226 | 288 | IPR000727 | - | |
| Cmo17g01031 | 322 | CDD | SNARE_syntaxin16 | 229 | 287 | - | - | |
| Cmo17g01031 | 322 | ProSitePatterns | Syntaxin / epimorphin family signature. | 232 | 271 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cmo17g01031 | 322 | PANTHER | SYNTAXIN | 1 | 317 | IPR045242 | - | |
| Cmo17g01031 | 322 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 1 | 317 | - | - | |
| Cmo17g01031 | 322 | SMART | tSNARE_6 | 221 | 288 | IPR000727 | - | |
| Cmo17g01031 | 322 | Gene3D | - | 73 | 280 | - | - | |
| Cmo17g01031 | 322 | SMART | SynN_4 | 67 | 182 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g01102 | Cmo-Chr5:8787283 | Cmo17g01031 | Cmo-Chr17:8784234 | 1.41E-100 | dispersed | |
| Cmo17g01031 | Cmo-Chr17:8784234 | Cmo13g00695 | Cmo-Chr13:7115501 | 4.31E-06 | dispersed | |
| Cmo17g01031 | Cmo-Chr17:8784234 | Cmo12g01056 | Cmo-Chr12:9759088 | 1.59E-147 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo17g01031 | K08489 | - | csv:101204192 | 549.666 |