Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01033 | ATGGCTACCAATTCTCATGCCCCTACTCCGAGAGGTCTTCTCTGTAATGCGGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACCAGATTTCAGGTTCATGGACTGCCAAACATCGGGAAAGGGAGTCTTATAGTTGGTAGTCTGCAGCAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGACTCGCACCGACCGTGCTTGCGTTGCTTCCTAACTGGGCTGTCTATTTCACAATCTATGGGCAGCTCAAAAGCTTTCTTCGTTCGGATGTTGAAAATCATCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGAGCTGGAGCTGCTACAACTATTGCAACGAATCCTCTATGGGTTGTTAAGACCAGGCTTCAGACGCAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGGTTTGCTCTTTCTTATCATGTTGCTATTCTGTTCTATGTATTTTATATGGAGAAGTTCGTGGATTATAAGGATTCTTGGCTCGACTCTAACACTCGATACCATGTTCTACAGTGGTCTTGTTCCTGCTTTGGCCGGTACAATACGACGACAGACAAACTCAGCGCACGTGATGTCGCAGTAGCCTCATCTGTCTCCAAGATATTTGCTTCCACATTGACTTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGTGTAACCGATTGCGTAAAGAAAGTATTTCAGCAAGATGGACTCCCCGGCTTCTATCGAGGATATTCCACAACCCCCATCACCATCTTCTTCATCATCTTCCAGTCGTTTTCTGCTGTTTGCCGGCGAAAATGTCCGGTGCCGGGGAAAATTCCGGTGGTGAGTGCTGTTACTATTCTGTACTTGGACTGTGTAAGCAAGCTTCTGGCGATGAAATCCGAGGAGCTTACCAAATGGCATCCCGATAAGTGGATGAAAGACCCAAAAATGGCCGCTGAATCTAAACGGCGGTTTCAGCAAATCCAAGAGGCTTATTCAGTTCTATCAAACAAGGGGAAAAGAAGCATATACGACGCCGGATTGATTTCATTTCTTACAGACGATGATGACGAAGGATTCTGCGATTTCATGAACGAAATGGTTTCGATGATGAAGAACGCCACACCGCAGGGGAAGAAGAAGAAGAACAGTTTGGAGGATCTAAGAGGATCGTTAATGGAGATGATGGTAGCCGATGAACAGCTCGGCTGGGAATTTCAATCTCGTCCTCTTAATGCTAGAAAAAGAAGCCGAGTTGCAGAGATTTGA | 1389 | 45.86 | MATNSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLRSDVENHQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYRFALSYHVAILFYVFYMEKFVDYKDSWLDSNTRYHVLQWSCSCFGRYNTTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGLPGFYRGYSTTPITIFFIIFQSFSAVCRRKCPVPGKIPVVSAVTILYLDCVSKLLAMKSEELTKWHPDKWMKDPKMAAESKRRFQQIQEAYSVLSNKGKRSIYDAGLISFLTDDDDEGFCDFMNEMVSMMKNATPQGKKKKNSLEDLRGSLMEMMVADEQLGWEFQSRPLNARKRSRVAEI | 462 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 8792819 | 8798669 | + | CmoCh17G010330.1 | Cmo17g01033 | 401416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01033 | 462 | ProSitePatterns | Nt-dnaJ domain signature. | 365 | 384 | IPR018253 | - | |
Cmo17g01033 | 462 | Gene3D | Mitochondrial carrier domain | 16 | 308 | IPR023395 | - | |
Cmo17g01033 | 462 | PRINTS | Mitochondrial carrier protein signature | 234 | 256 | IPR002067 | GO:0055085 | |
Cmo17g01033 | 462 | PRINTS | Mitochondrial carrier protein signature | 29 | 43 | IPR002067 | GO:0055085 | |
Cmo17g01033 | 462 | PRINTS | Mitochondrial carrier protein signature | 124 | 142 | IPR002067 | GO:0055085 | |
Cmo17g01033 | 462 | PRINTS | Mitochondrial carrier protein signature | 74 | 94 | IPR002067 | GO:0055085 | |
Cmo17g01033 | 462 | PRINTS | Mitochondrial carrier protein signature | 16 | 29 | IPR002067 | GO:0055085 | |
Cmo17g01033 | 462 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 1 | 186 | IPR044712 | GO:0006862|GO:0055085 | |
Cmo17g01033 | 462 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 217 | 309 | IPR044712 | GO:0006862|GO:0055085 | |
Cmo17g01033 | 462 | Gene3D | DnaJ domain | 340 | 387 | IPR036869 | - | |
Cmo17g01033 | 462 | PANTHER | NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC | 217 | 309 | - | - | |
Cmo17g01033 | 462 | PANTHER | NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC | 1 | 186 | - | - | |
Cmo17g01033 | 462 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 225 | 313 | IPR018108 | - | |
Cmo17g01033 | 462 | ProSiteProfiles | dnaJ domain profile. | 316 | 388 | IPR001623 | - | |
Cmo17g01033 | 462 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 11 | 99 | IPR018108 | - | |
Cmo17g01033 | 462 | Pfam | Mitochondrial carrier protein | 108 | 172 | IPR018108 | - | |
Cmo17g01033 | 462 | Pfam | Mitochondrial carrier protein | 231 | 297 | IPR018108 | - | |
Cmo17g01033 | 462 | Pfam | Mitochondrial carrier protein | 15 | 102 | IPR018108 | - | |
Cmo17g01033 | 462 | Pfam | DnaJ domain | 344 | 385 | IPR001623 | - | |
Cmo17g01033 | 462 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 109 | 198 | IPR018108 | - | |
Cmo17g01033 | 462 | SUPERFAMILY | Mitochondrial carrier | 13 | 301 | IPR023395 | - | |
Cmo17g01033 | 462 | SUPERFAMILY | Chaperone J-domain | 344 | 409 | IPR036869 | - | |
Cmo17g01033 | 462 | CDD | DnaJ | 345 | 377 | IPR001623 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00433 | Cmo17g01033 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01100 | Cmo-Chr5:8776947 | Cmo17g01033 | Cmo-Chr17:8792819 | 2.03E-31 | dispersed | |
Cmo12g01054 | Cmo-Chr12:9748612 | Cmo17g01033 | Cmo-Chr17:8792819 | 1.01E-30 | dispersed | |
Cmo15g00963 | Cmo-Chr15:5025679 | Cmo17g01033 | Cmo-Chr17:8792819 | 5.28E-92 | dispersed | |
Cmo15g00983 | Cmo-Chr15:5243338 | Cmo17g01033 | Cmo-Chr17:8792819 | 7.09E-21 | dispersed | |
Cmo17g01033 | Cmo-Chr17:8792819 | Cmo08g01194 | Cmo-Chr8:7595913 | 2.67E-22 | dispersed | |
Cmo17g01033 | Cmo-Chr17:8792819 | Cmo08g00433 | Cmo-Chr8:2683606 | 1.07E-141 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01033 | K15115 | - | csv:101204681 | 422.55 |