Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01033 ATGGCTACCAATTCTCATGCCCCTACTCCGAGAGGTCTTCTCTGTAATGCGGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATCAAGACCAGATTTCAGGTTCATGGACTGCCAAACATCGGGAAAGGGAGTCTTATAGTTGGTAGTCTGCAGCAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGACTCGCACCGACCGTGCTTGCGTTGCTTCCTAACTGGGCTGTCTATTTCACAATCTATGGGCAGCTCAAAAGCTTTCTTCGTTCGGATGTTGAAAATCATCAGCTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGAGCTGGAGCTGCTACAACTATTGCAACGAATCCTCTATGGGTTGTTAAGACCAGGCTTCAGACGCAGGGAATGAAATCTGGTGTGCTACCATATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTCTGAAGAAGGCATTCGTGGATTGTACAGGTTTGCTCTTTCTTATCATGTTGCTATTCTGTTCTATGTATTTTATATGGAGAAGTTCGTGGATTATAAGGATTCTTGGCTCGACTCTAACACTCGATACCATGTTCTACAGTGGTCTTGTTCCTGCTTTGGCCGGTACAATACGACGACAGACAAACTCAGCGCACGTGATGTCGCAGTAGCCTCATCTGTCTCCAAGATATTTGCTTCCACATTGACTTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTTCACTCTGAGAAGCGTTATTCTGGTGTAACCGATTGCGTAAAGAAAGTATTTCAGCAAGATGGACTCCCCGGCTTCTATCGAGGATATTCCACAACCCCCATCACCATCTTCTTCATCATCTTCCAGTCGTTTTCTGCTGTTTGCCGGCGAAAATGTCCGGTGCCGGGGAAAATTCCGGTGGTGAGTGCTGTTACTATTCTGTACTTGGACTGTGTAAGCAAGCTTCTGGCGATGAAATCCGAGGAGCTTACCAAATGGCATCCCGATAAGTGGATGAAAGACCCAAAAATGGCCGCTGAATCTAAACGGCGGTTTCAGCAAATCCAAGAGGCTTATTCAGTTCTATCAAACAAGGGGAAAAGAAGCATATACGACGCCGGATTGATTTCATTTCTTACAGACGATGATGACGAAGGATTCTGCGATTTCATGAACGAAATGGTTTCGATGATGAAGAACGCCACACCGCAGGGGAAGAAGAAGAAGAACAGTTTGGAGGATCTAAGAGGATCGTTAATGGAGATGATGGTAGCCGATGAACAGCTCGGCTGGGAATTTCAATCTCGTCCTCTTAATGCTAGAAAAAGAAGCCGAGTTGCAGAGATTTGA 1389 45.86 MATNSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKSFLRSDVENHQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIASEEGIRGLYRFALSYHVAILFYVFYMEKFVDYKDSWLDSNTRYHVLQWSCSCFGRYNTTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGLPGFYRGYSTTPITIFFIIFQSFSAVCRRKCPVPGKIPVVSAVTILYLDCVSKLLAMKSEELTKWHPDKWMKDPKMAAESKRRFQQIQEAYSVLSNKGKRSIYDAGLISFLTDDDDEGFCDFMNEMVSMMKNATPQGKKKKNSLEDLRGSLMEMMVADEQLGWEFQSRPLNARKRSRVAEI 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8792819 8798669 + CmoCh17G010330.1 Cmo17g01033 401416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01033 462 ProSitePatterns Nt-dnaJ domain signature. 365 384 IPR018253 -
Cmo17g01033 462 Gene3D Mitochondrial carrier domain 16 308 IPR023395 -
Cmo17g01033 462 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Cmo17g01033 462 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Cmo17g01033 462 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Cmo17g01033 462 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Cmo17g01033 462 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Cmo17g01033 462 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 186 IPR044712 GO:0006862|GO:0055085
Cmo17g01033 462 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 217 309 IPR044712 GO:0006862|GO:0055085
Cmo17g01033 462 Gene3D DnaJ domain 340 387 IPR036869 -
Cmo17g01033 462 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 217 309 - -
Cmo17g01033 462 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 186 - -
Cmo17g01033 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 313 IPR018108 -
Cmo17g01033 462 ProSiteProfiles dnaJ domain profile. 316 388 IPR001623 -
Cmo17g01033 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cmo17g01033 462 Pfam Mitochondrial carrier protein 108 172 IPR018108 -
Cmo17g01033 462 Pfam Mitochondrial carrier protein 231 297 IPR018108 -
Cmo17g01033 462 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Cmo17g01033 462 Pfam DnaJ domain 344 385 IPR001623 -
Cmo17g01033 462 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 198 IPR018108 -
Cmo17g01033 462 SUPERFAMILY Mitochondrial carrier 13 301 IPR023395 -
Cmo17g01033 462 SUPERFAMILY Chaperone J-domain 344 409 IPR036869 -
Cmo17g01033 462 CDD DnaJ 345 377 IPR001623 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00433 Cmo17g01033 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01100 Cmo-Chr5:8776947 Cmo17g01033 Cmo-Chr17:8792819 2.03E-31 dispersed
Cmo12g01054 Cmo-Chr12:9748612 Cmo17g01033 Cmo-Chr17:8792819 1.01E-30 dispersed
Cmo15g00963 Cmo-Chr15:5025679 Cmo17g01033 Cmo-Chr17:8792819 5.28E-92 dispersed
Cmo15g00983 Cmo-Chr15:5243338 Cmo17g01033 Cmo-Chr17:8792819 7.09E-21 dispersed
Cmo17g01033 Cmo-Chr17:8792819 Cmo08g01194 Cmo-Chr8:7595913 2.67E-22 dispersed
Cmo17g01033 Cmo-Chr17:8792819 Cmo08g00433 Cmo-Chr8:2683606 1.07E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01033 K15115 - csv:101204681 422.55