Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01038 ATGGCGGCTGCCCCACCCACCACCGCCGCATTCTACTCTCTCCTCCTCATCTCCCTCTACATCACCGCCGCTGGAATCTCCACCTCCGCCGCTCCCACCGGTTCGGTGTGCAGCTCGGCCCCAGACCCCTCCTACTGCAAATCGGCCCTCCCAAACCAAACCGGCAATGTGTACTCGTACGGACGGTCGTCCGTCAGAAAGTCGCTGTCGTCGTCGCAGAAGTTCCTCCGGCTAGTGGAGAAGTATCTCCGGTCCCGGTCGTCGCTGACGGTGGCGGCAGTTAGGGCGCTGGAGGACTGCCAACTGCTGGCGGGACTGAACATAGATTACCTGACGACGTCGTTCCGGACGGTGAACTCGACGAGCTGGACGCTGCCGGAGATGAAGGCGGAGGACGTGCAGAGCCTGTTGAGTGCGATATTGACGAACCAACAGACATGTTTGGATGGGCTTAAGGCGACGGCGGGGTCTTGGTCTCTCAAAAATGGCCTTTCCCTCCCACTTGCCGCTGACACCAAGCTCTACTCTATGTCCTTAGCCTTTTTCACCAAAGGTTGGGTTCCAAAGAAGAAGAAAAAACCGACATGGACTTCAGCCGGGAGACAGGGCGGGTTCAACAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCAAGGCGATTTACGAGACGGCAACTCGCCGGAATCTGCTGCAGACCGAAGACGGTGGCGACGATCAGATTTCGGTTAGGGACATCGTCGTCGTCAGTCAAGACGGCAGCGGAAATTTCACAACCATTAATGAAGCGATTGCGGCGGCGCCGAACAACTCTGCTCCGACGGACGGCTATTTCTTGATCTTCGTGGATGCTGGAGTTTATGAAGAATACGTGACGATTGCGAAGAATAAGAGGTACTTGATGATGATCGGAGATGGGATTAATCAGACCGTCGTCACTGGTAATCGGAACGTCGTCGACGGCTGGACCACTTTTAATTCCGCCACATTTGCGGTGGTCGGACCCGGATTCGTAGCGGTAAACATGACATTCAGAAACGCCGCCGGAGCAATAAAGCACCAAGCCGTGGCCGTCCGGAACAGCGCCGACTTATCAACATTCTACCTCTGCAGCTTCGAGGGCTACCAAGACACCTTATACACCCACTCCCTCCGCCAATTCTACCGTGACTGCGATATTTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTACAGAACTGCAACATCTACCCGCGTCTGCCGATGGCCAACCAGTTCAACGCCATCACTGCCCAAGGCCGGACCGACCCAAATCAGAACACCGGCACCTCAATCCACAACTGTCGGATCACGGCAGCCGACGACCTCGCAAACAATAGCGGCGCCAGAGTGAACACGTTCCTCGGGCGGCCATGGAAGGAGTACTCGAGGACGGTTTATATGCAGAGCTTTATGGATGATTTGATTAATCCGGCGGGGTGGAGGGCTTGGGATGGAGATTTTGCTTTGAACACTTTGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTTAATTGGGTGGGATTTCATTTGATTGATGATACTGATGCTGGGAATTTCACGGCGGGGAATTTTTTGATGGCGGACGATTGGGTGCCGCAGACCGGCGTTCCCTACACCAGCGGCCTCACGGAGTAG 1689 55.36 MAAAPPTTAAFYSLLLISLYITAAGISTSAAPTGSVCSSAPDPSYCKSALPNQTGNVYSYGRSSVRKSLSSSQKFLRLVEKYLRSRSSLTVAAVRALEDCQLLAGLNIDYLTTSFRTVNSTSWTLPEMKAEDVQSLLSAILTNQQTCLDGLKATAGSWSLKNGLSLPLAADTKLYSMSLAFFTKGWVPKKKKKPTWTSAGRQGGFNNGRMSLKMSSRTKAIYETATRRNLLQTEDGGDDQISVRDIVVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVDAGVYEEYVTIAKNKRYLMMIGDGINQTVVTGNRNVVDGWTTFNSATFAVVGPGFVAVNMTFRNAAGAIKHQAVAVRNSADLSTFYLCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVLQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNSGARVNTFLGRPWKEYSRTVYMQSFMDDLINPAGWRAWDGDFALNTLYYAEFGNFGPGSNTSERVNWVGFHLIDDTDAGNFTAGNFLMADDWVPQTGVPYTSGLTE 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8815401 8817885 - CmoCh17G010380.1 Cmo17g01038 401421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01038 562 Pfam Plant invertase/pectin methylesterase inhibitor 35 180 IPR006501 GO:0004857
Cmo17g01038 562 PANTHER PECTINESTERASE 24 560 - -
Cmo17g01038 562 SMART PMEI_2 27 181 IPR006501 GO:0004857
Cmo17g01038 562 Gene3D - 241 560 IPR012334 -
Cmo17g01038 562 CDD PMEI-like_3 35 186 - -
Cmo17g01038 562 Pfam Pectinesterase 247 545 IPR000070 GO:0030599|GO:0042545
Cmo17g01038 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 184 IPR035513 -
Cmo17g01038 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 184 IPR035513 -
Cmo17g01038 562 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Cmo17g01038 562 SUPERFAMILY Pectin lyase-like 245 559 IPR011050 -
Cmo17g01038 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 24 560 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01688 Cmo-Chr1:12715396 Cmo17g01038 Cmo-Chr17:8815401 0 dispersed
Cmo04g01529 Cmo-Chr4:7814003 Cmo17g01038 Cmo-Chr17:8815401 8.86E-171 dispersed
Cmo17g01038 Cmo-Chr17:8815401 Cmo20g01147 Cmo-Chr20:11262277 0 dispersed
Cmo17g01038 Cmo-Chr17:8815401 Cmo17g01039 Cmo-Chr17:8822967 6.12E-133 tandem
Cmo17g01038 Cmo-Chr17:8815401 Cmo08g00431 Cmo-Chr8:2675526 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01038 K01051 - csv:101205321 971.074