Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01039 ATGTACGGCCTGAGAAGCAGAGCTCAAAGCTCTTCAAATCCCACCGCCTCCATTTCCGCCATTTTCACCTTCTTTTCCGTTCTTTTCCTTTGCTCCTTCAAACCCATTTCTTCAAATCCCCAAACCCACCAAACCGCTCGATCCCTTTGCAATGGCACTCTGTTTCCAAATCTCTGTTTCTCAAAGCTCTCCTCTTTTCCCCAACTTGCCTCCCTCTCGCCGGAAAAGCTCGCCGGCTCCGCCCTCAACTTCACCAACGATGAGGTTCACGGTGCCTACGCCAATTGCTCCAAGCTCAAGACTCTCTTCTATGGAGGCCTGAATCCCACCGACCGCCGCGCCCTCGATGACTGCCTTGAGCTTCTCGATGGCAGCATTGCCGAACTCCAAACTTCGATTTACGATCTTTCCCCGTCGCAGTCCGCCGCCCGCCACTCCCACGATCTGTTGACGTTGGTCAGCGCCGCCATGACTAACCACCGGACTTGTCTTGATGGGTTTTATAATAGTTCCGGGACTGTCAGGAAACGGGTGGAGCTGTATTTGGGGAAAATCGAACAGCATTTGAGTATTGATTTGGCTATGCTGAAGAAAATCCCTGGAGTTAAACGGGCTGCCACGGCGGAAGAGGTGTTGCCGGAGTATGGGGCGGTGAGAGGTGGGTTTCCGATGTGGGTTTCGGTGAAGGATCGGAGATTGTTGCAGGCGTCGGTGAATGAAACGAAGTTCAATTTGGTGGTGGCGAAGGATGGCTCCGGGAATTTCACCACCGTCGGCGCGGCTGTCGCCGCCGCTCCAAATTCGAGCACGACCAGGTTTGTAATATACATAAAAGCAGGGGCCTATTTTGAGAATGTGGAAATAGAACGGAAAAAGACAAACTTGATGTTCGTCGGCGATGGGATCGGCAAGACGCTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACCTTCCGATCAGCCACCGTCGTGGCGGTCGGCAATGGGTTCATAGCGAAAGGCATAACATTCGAAAACTTTGCTGGTCCGAGCAAGCACCAAGCCGTAGCCTTCCGAAGCAACTCTGACTTCTCAGCATTTTACCAATGTAGCTTTATCGGTTATCAAGACACTCTCTACGTCCATTCTCTCCGTCAATTCTATCGCGAATGCGACGTCTATGGCACCATCGACTTCATCTTCGGTAACGCAGCAGTCATCTTCCAAAACTGTAATCTCTATGCTCGAAAACCCAACTCAAACCAACGCAACATATTCACAGCTCAAGGTCGTGAGGATCCTAACCAAAATACCGGAATCTCAATCCTCAACTGCAAGGTTGAAGCCGCCTCTGATTTGCTCCCAGTTCTTCCCTCTTTTAGAACTTACTTGGGTCGACCCTGGAAGCTCTACTCGAGGACGGTTTTTCTCAAGTCATTTATTGGGCAATTGGTTGAGCCAGTCGGATGGCTTGAGTGGAGTGGGACATTCGCATTAGATACTTTGTATTATGGGGAGTATTTGAATCGTGGACCTGGTTCTAATACAACTGGACGAGTTACTTGGCCAGGTTATCGGGTCATTACTAACTCAACGGAAGCGAGTCAGTTCACAGTGGAGGCGTTTATACAGGGTAGTGAGTGGCTGAACTCGACCGAGATTCCTTTCTTCTCCGGTTTGGCTTGA 1671 50.75 MYGLRSRAQSSSNPTASISAIFTFFSVLFLCSFKPISSNPQTHQTARSLCNGTLFPNLCFSKLSSFPQLASLSPEKLAGSALNFTNDEVHGAYANCSKLKTLFYGGLNPTDRRALDDCLELLDGSIAELQTSIYDLSPSQSAARHSHDLLTLVSAAMTNHRTCLDGFYNSSGTVRKRVELYLGKIEQHLSIDLAMLKKIPGVKRAATAEEVLPEYGAVRGGFPMWVSVKDRRLLQASVNETKFNLVVAKDGSGNFTTVGAAVAAAPNSSTTRFVIYIKAGAYFENVEIERKKTNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVVAVGNGFIAKGITFENFAGPSKHQAVAFRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRECDVYGTIDFIFGNAAVIFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLLPVLPSFRTYLGRPWKLYSRTVFLKSFIGQLVEPVGWLEWSGTFALDTLYYGEYLNRGPGSNTTGRVTWPGYRVITNSTEASQFTVEAFIQGSEWLNSTEIPFFSGLA 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8822967 8825991 + CmoCh17G010390.1 Cmo17g01039 401422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01039 556 Pfam Plant invertase/pectin methylesterase inhibitor 47 194 IPR006501 GO:0004857
Cmo17g01039 556 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Cmo17g01039 556 CDD PMEI-like_3 48 201 - -
Cmo17g01039 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 201 IPR035513 -
Cmo17g01039 556 SMART PMEI_2 41 195 IPR006501 GO:0004857
Cmo17g01039 556 Gene3D - 238 555 IPR012334 -
Cmo17g01039 556 PANTHER PECTINESTERASE 40 552 - -
Cmo17g01039 556 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Cmo17g01039 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 200 IPR035513 -
Cmo17g01039 556 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Cmo17g01039 556 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 198 IPR006501 GO:0004857
Cmo17g01039 556 PANTHER PECTINESTERASE 40 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01145 Cmo-Chr2:6934865 Cmo17g01039 Cmo-Chr17:8822967 3.44E-173 dispersed
Cmo07g00290 Cmo-Chr7:1415430 Cmo17g01039 Cmo-Chr17:8822967 1.28E-153 dispersed
Cmo14g01249 Cmo-Chr14:10538568 Cmo17g01039 Cmo-Chr17:8822967 2.42E-159 dispersed
Cmo15g01008 Cmo-Chr15:5577017 Cmo17g01039 Cmo-Chr17:8822967 2.08E-149 dispersed
Cmo15g01089 Cmo-Chr15:7241794 Cmo17g01039 Cmo-Chr17:8822967 1.63E-168 dispersed
Cmo16g00058 Cmo-Chr16:242264 Cmo17g01039 Cmo-Chr17:8822967 6.72E-162 dispersed
Cmo17g00631 Cmo-Chr17:6599797 Cmo17g01039 Cmo-Chr17:8822967 5.43E-171 dispersed
Cmo17g01039 Cmo-Chr17:8822967 Cmo18g01346 Cmo-Chr18:12739181 1.12E-157 dispersed
Cmo17g01038 Cmo-Chr17:8815401 Cmo17g01039 Cmo-Chr17:8822967 6.12E-133 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01039 K01051 - csv:101205557 986.482