Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01082 ATGGCCGGTATTAAAGTTCACGGAATCCCCACTTCTACAGCCACAGCTAGGGTTCTAGCTGCCCTCTACGAAAAGGGCCTTCAATTCGAGCTTGTTAATGTTAAGTTGCATGAAGGGGAACACAAGAAAGAGCCCTTCCTCTCAATCAATCCCTTTGGTCAAGTTCCTGGGTTTAACGATGGGGATCTGACGCTTTTTGAATCCAGGGCGATCACTCAGTATATCTCGGGAAATTATGCTAGCAACGGAACCGAGTTGATTCCGAAAGACTCCAAGAAAGGGGCGGTCGTGTTAACGTGGATCGAGGTGGAGAGCCACCATTTTGACCCAGTAGCCATGAAACTGGTGTTCGAGTTCTGCCTAAAGCCATTATTTGGGCTGGGTGATGCAGATCCTGCAGTGGTTGAGAAAAGCGAGGCTGATTTAGGCCAAGTTCTTGACATCTACGAGAAAAGGCTGTCCGGGTCCAAATACTTGGGAGGTGACTCCTTCAGCTTGGCTGATCTGCACCATCTCCCCGTATTAGGCTACCTATTGGCTACACCGTCGAAGAAACTGTTTGAATCTAGACCCCATGTCAATGCTTGGGTGGGTGATATCATAGCCAGGCCATCTTGGGCCAAAGTTCTTGCTCTCCGCAAGTGA 645 49.15 MAGIKVHGIPTSTATARVLAALYEKGLQFELVNVKLHEGEHKKEPFLSINPFGQVPGFNDGDLTLFESRAITQYISGNYASNGTELIPKDSKKGAVVLTWIEVESHHFDPVAMKLVFEFCLKPLFGLGDADPAVVEKSEADLGQVLDIYEKRLSGSKYLGGDSFSLADLHHLPVLGYLLATPSKKLFESRPHVNAWVGDIIARPSWAKVLALRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8958042 8959383 - CmoCh17G010820.1 Cmo17g01082 401465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01082 214 CDD GST_C_Phi 92 210 IPR034347 -
Cmo17g01082 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cmo17g01082 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 214 - -
Cmo17g01082 214 SUPERFAMILY Thioredoxin-like 2 88 IPR036249 -
Cmo17g01082 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
Cmo17g01082 214 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 214 - -
Cmo17g01082 214 Gene3D - 90 214 - -
Cmo17g01082 214 Gene3D Glutaredoxin 1 87 - -
Cmo17g01082 214 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cmo17g01082 214 Pfam Glutathione S-transferase, C-terminal domain 109 204 IPR004046 -
Cmo17g01082 214 SFLD Main (cytGST) 1 212 - -
Cmo17g01082 214 CDD GST_N_Phi 4 76 - -
Cmo17g01082 214 SFLD Main.5: Phi-like 1 212 - -
Cmo17g01082 214 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01082 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101212291 379.407
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00404 Cmo17g01082 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00779 Cmo-Chr4:3893619 Cmo17g01082 Cmo-Chr17:8958042 1.58E-13 dispersed
Cmo08g00404 Cmo-Chr8:2503761 Cmo17g01082 Cmo-Chr17:8958042 2.38E-114 dispersed
Cmo12g00335 Cmo-Chr12:2098694 Cmo17g01082 Cmo-Chr17:8958042 2.49E-53 dispersed
Cmo16g00640 Cmo-Chr16:3156791 Cmo17g01082 Cmo-Chr17:8958042 1.16E-10 dispersed
Cmo16g00830 Cmo-Chr16:4362850 Cmo17g01082 Cmo-Chr17:8958042 2.30E-09 dispersed
Cmo17g01082 Cmo-Chr17:8958042 Cmo02g00647 Cmo-Chr2:4034616 6.21E-10 dispersed
Cmo17g01082 Cmo-Chr17:8958042 Cmo08g00403 Cmo-Chr8:2501640 2.00E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g261 . . . . . Bpe06g00515 . . Cmo08g00404 Cmo17g01082 . . . . Sed11g1742 . . Bhi09g00857 Tan06g0840 Cmetu06g1890 . . . . . . . . . . . . Cone20ag0934 . . Lsi02g02381 Csa07g01817 . Cme01g02339 . . . . . . . . . . . Cma08g00410 Cma17g01106 Car08g00363 Car17g01048 . Cpe12g00950 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g01082 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.6e-65 244.6
Cmo08g00403 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.5e-64 242.7
Cmo08g00404 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 1.0e-57 220.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.1e-66 249.6
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 8.6e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 7.8e-58 221.1
Cmo08g00403 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 9.1e-61 231.1
Cmo17g01082 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cmo08g00404 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 2.0e-55 213.4
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.9e-65 245.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.5e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.7e-57 219.9
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 7.7e-66 247.7
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 7.0e-59 224.6
Cmo08g00403 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.9e-69 260.0
Cmo17g01082 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cmo08g00404 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 3.0e-59 226.1
Cmo03g00394 . 3 216 Glutathione S-transferase Gene Family AT3G09270 52.1 8.2e-66 247.7
Cmo03g00395 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.4 3.8e-63 238.8
Cmo07g01074 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-58 223.0
Cmo04g00338 . 4 219 Glutathione S-transferase Gene Family AT1G69930 51.2 2.7e-59 226.1
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59670 52.1 2.1e-56 216.5
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59700 54.3 8.3e-61 231.1
Cmo04g00338 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.9 1.7e-74 276.6
Cmo04g00339 . 6 216 Glutathione S-transferase Gene Family AT1G10370 55.5 3.2e-65 245.7
Cmo04g00338 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 1.1e-70 263.8
Cmo04g00339 . 5 216 Glutathione S-transferase Gene Family AT1G10360 52.0 4.7e-61 231.9
Cmo04g00688 . 1 205 Glutathione S-transferase Gene Family AT1G78380 72.2 1.6e-85 313.2
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G78380 61.5 2.2e-71 266.2
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G78380 66.7 1.3e-36 150.6
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78370 65.5 7.0e-78 287.7
Cmo16g00499 . 1 188 Glutathione S-transferase Gene Family AT1G78370 58.9 5.9e-69 258.1
Cmo04g00687 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.5 1.8e-57 219.9
Cmo04g00688 . 1 212 Glutathione S-transferase Gene Family AT1G78340 62.0 1.1e-75 280.4
Cmo16g00499 . 1 189 Glutathione S-transferase Gene Family AT1G78340 61.4 4.8e-71 265.0
Cmo16g00500 . 1 96 Glutathione S-transferase Gene Family AT1G78340 68.8 3.5e-37 152.5
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78320 52.9 3.0e-56 215.7
Cmo16g00499 . 1 184 Glutathione S-transferase Gene Family AT1G78320 50.7 4.2e-50 195.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17180 66.0 4.0e-81 298.5
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G17180 63.9 4.3e-75 278.5
Cmo14g02022 . 129 284 Glutathione S-transferase Gene Family AT1G17180 51.6 1.3e-39 160.6
Cmo06g01186 . 8 162 Glutathione S-transferase Gene Family AT1G17180 50.6 1.2e-37 154.1
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G17180 64.8 2.1e-37 153.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17190 57.5 7.8e-69 257.7
Cmo16g00499 . 3 190 Glutathione S-transferase Gene Family AT1G17190 53.6 1.3e-63 240.4
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT3G43800 55.1 2.4e-65 246.1
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT1G53680 58.0 1.2e-64 243.8
Cmo04g00687 . 4 220 Glutathione S-transferase Gene Family AT1G53680 51.8 4.4e-59 225.3
Cmo16g00499 . 4 185 Glutathione S-transferase Gene Family AT1G53680 52.7 3.1e-57 219.2
Cmo02g00647 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 6.8e-61 231.1
Cmo02g00645 . 50 217 Glutathione S-transferase Gene Family AT2G02390 66.1 2.9e-59 225.7
Cmo06g01161 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.3e-48 189.5
Cmo02g00647 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 4.8e-74 275.0
Cmo02g00645 . 9 215 Glutathione S-transferase Gene Family AT2G02380 61.4 9.4e-70 260.8
Cmo06g01161 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.4e-62 236.9
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.8 9.5e-92 334.0
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 5.8e-89 324.7
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 1.1e-88 325.1
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 1.2e-84 311.6
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 3.6e-88 322.0
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02780 68.0 9.3e-84 307.4
Cmo04g01303 . 76 295 Glutathione S-transferase Gene Family AT5G02780 64.4 9.0e-79 290.8
Cmo04g01303 . 39 293 Glutathione S-transferase Gene Family AT3G55040 59.0 2.1e-82 303.1
Cmo06g00337 . 5 237 Glutathione S-transferase Gene Family AT3G55040 62.2 6.9e-81 298.1
Cmo06g00338 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 1.1e-75 280.8
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.2 5.4e-92 334.7
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 2.0e-91 332.8
Cmo04g01303 . 62 295 Glutathione S-transferase Gene Family AT5G02790 62.1 8.6e-82 300.8
Cmo04g00243 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 3.9e-81 298.5
Cmo04g01285 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.8e-78 289.7
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G19570 61.4 7.8e-74 274.2
Cmo04g00242 . 32 242 Glutathione S-transferase Gene Family AT1G19570 62.3 1.6e-71 266.5
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G19570 76.5 4.3e-40 162.2
Cmo04g00243 . 256 465 Glutathione S-transferase Gene Family AT1G75270 73.0 2.5e-88 322.4
Cmo04g01285 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.8e-86 316.2
Cmo04g00242 . 32 243 Glutathione S-transferase Gene Family AT1G75270 65.3 1.3e-76 283.5
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G75270 63.3 2.4e-75 279.3
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G75270 77.6 1.5e-40 163.7
Cmo14g00834 . 55 276 Glutathione S-transferase Gene Family AT5G16710 77.0 1.2e-100 363.6
Cmo04g00243 . 256 463 Glutathione S-transferase Gene Family AT5G16710 60.1 1.0e-72 270.8
Cmo04g01285 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.3e-70 263.8
Cmo04g00242 . 20 241 Glutathione S-transferase Gene Family AT5G16710 52.3 3.4e-63 239.2
Cmo09g00759 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 69.3 2.3e-107 386.0
Cmo01g01417 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 67.8 2.8e-105 379.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01082 Cmo_Chr17 FPKM 33.218803 38.754314 1657.459473 1764.937134 2.846085 1.72917 1.332022 2106.460205 2213.50415 2416.045166