Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01082 ATGGCCGGTATTAAAGTTCACGGAATCCCCACTTCTACAGCCACAGCTAGGGTTCTAGCTGCCCTCTACGAAAAGGGCCTTCAATTCGAGCTTGTTAATGTTAAGTTGCATGAAGGGGAACACAAGAAAGAGCCCTTCCTCTCAATCAATCCCTTTGGTCAAGTTCCTGGGTTTAACGATGGGGATCTGACGCTTTTTGAATCCAGGGCGATCACTCAGTATATCTCGGGAAATTATGCTAGCAACGGAACCGAGTTGATTCCGAAAGACTCCAAGAAAGGGGCGGTCGTGTTAACGTGGATCGAGGTGGAGAGCCACCATTTTGACCCAGTAGCCATGAAACTGGTGTTCGAGTTCTGCCTAAAGCCATTATTTGGGCTGGGTGATGCAGATCCTGCAGTGGTTGAGAAAAGCGAGGCTGATTTAGGCCAAGTTCTTGACATCTACGAGAAAAGGCTGTCCGGGTCCAAATACTTGGGAGGTGACTCCTTCAGCTTGGCTGATCTGCACCATCTCCCCGTATTAGGCTACCTATTGGCTACACCGTCGAAGAAACTGTTTGAATCTAGACCCCATGTCAATGCTTGGGTGGGTGATATCATAGCCAGGCCATCTTGGGCCAAAGTTCTTGCTCTCCGCAAGTGA 645 49.15 MAGIKVHGIPTSTATARVLAALYEKGLQFELVNVKLHEGEHKKEPFLSINPFGQVPGFNDGDLTLFESRAITQYISGNYASNGTELIPKDSKKGAVVLTWIEVESHHFDPVAMKLVFEFCLKPLFGLGDADPAVVEKSEADLGQVLDIYEKRLSGSKYLGGDSFSLADLHHLPVLGYLLATPSKKLFESRPHVNAWVGDIIARPSWAKVLALRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8958042 8959383 - CmoCh17G010820.1 Cmo17g01082 401465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01082 214 CDD GST_C_Phi 92 210 IPR034347 -
Cmo17g01082 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cmo17g01082 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 4 214 - -
Cmo17g01082 214 SUPERFAMILY Thioredoxin-like 2 88 IPR036249 -
Cmo17g01082 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
Cmo17g01082 214 PANTHER GLUTATHIONE S-TRANSFERASE F6-RELATED 4 214 - -
Cmo17g01082 214 Gene3D - 90 214 - -
Cmo17g01082 214 Gene3D Glutaredoxin 1 87 - -
Cmo17g01082 214 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cmo17g01082 214 Pfam Glutathione S-transferase, C-terminal domain 109 204 IPR004046 -
Cmo17g01082 214 SFLD Main (cytGST) 1 212 - -
Cmo17g01082 214 CDD GST_N_Phi 4 76 - -
Cmo17g01082 214 SFLD Main.5: Phi-like 1 212 - -
Cmo17g01082 214 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00404 Cmo17g01082 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00779 Cmo-Chr4:3893619 Cmo17g01082 Cmo-Chr17:8958042 1.58E-13 dispersed
Cmo08g00404 Cmo-Chr8:2503761 Cmo17g01082 Cmo-Chr17:8958042 2.38E-114 dispersed
Cmo12g00335 Cmo-Chr12:2098694 Cmo17g01082 Cmo-Chr17:8958042 2.49E-53 dispersed
Cmo16g00640 Cmo-Chr16:3156791 Cmo17g01082 Cmo-Chr17:8958042 1.16E-10 dispersed
Cmo16g00830 Cmo-Chr16:4362850 Cmo17g01082 Cmo-Chr17:8958042 2.30E-09 dispersed
Cmo17g01082 Cmo-Chr17:8958042 Cmo02g00647 Cmo-Chr2:4034616 6.21E-10 dispersed
Cmo17g01082 Cmo-Chr17:8958042 Cmo08g00403 Cmo-Chr8:2501640 2.00E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01082 K00799 - csv:101212291 379.407