Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01087 ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCAGCGGCGGAGTTGGTGGCAGTACCGGTGGGTCGAGCGAAGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTCGGGTTCGATGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA 474 48.31 MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8978176 8978649 - CmoCh17G010870.1 Cmo17g01087 401470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01087 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo17g01087 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Cmo17g01087 157 ProSitePatterns NF-YB/HAP3 subunit signature. 83 99 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo17g01087 157 SUPERFAMILY Histone-fold 49 150 IPR009072 GO:0046982
Cmo17g01087 157 Gene3D Histone, subunit A 44 156 IPR009072 GO:0046982
Cmo17g01087 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 36 153 - -
Cmo17g01087 157 MobiDBLite consensus disorder prediction 22 41 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01165 Cmo-Chr10:10362746 Cmo17g01087 Cmo-Chr17:8978176 1.97E-41 dispersed
Cmo17g01087 Cmo-Chr17:8978176 Cmo14g00178 Cmo-Chr14:811623 3.97E-48 dispersed
Cmo17g01087 Cmo-Chr17:8978176 Cmo20g00682 Cmo-Chr20:3345325 6.28E-47 transposed
Cmo17g01087 Cmo-Chr17:8978176 Cmo02g00237 Cmo-Chr2:1117825 1.84E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11429 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01087 K08065 - csv:101204763 260.766