Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01087 ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCAGCGGCGGAGTTGGTGGCAGTACCGGTGGGTCGAGCGAAGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCTGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTCGGGTTCGATGATTATGCCGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATACTCATGATGCATGA 474 48.31 MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 8978176 8978649 - CmoCh17G010870.1 Cmo17g01087 401470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01087 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo17g01087 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Cmo17g01087 157 ProSitePatterns NF-YB/HAP3 subunit signature. 83 99 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo17g01087 157 SUPERFAMILY Histone-fold 49 150 IPR009072 GO:0046982
Cmo17g01087 157 Gene3D Histone, subunit A 44 156 IPR009072 GO:0046982
Cmo17g01087 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 36 153 - -
Cmo17g01087 157 MobiDBLite consensus disorder prediction 22 41 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Cmo17g01087 157 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01087 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:101204763 260.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g01165 Cmo-Chr10:10362746 Cmo17g01087 Cmo-Chr17:8978176 1.97E-41 dispersed
Cmo17g01087 Cmo-Chr17:8978176 Cmo14g00178 Cmo-Chr14:811623 3.97E-48 dispersed
Cmo17g01087 Cmo-Chr17:8978176 Cmo20g00682 Cmo-Chr20:3345325 6.28E-47 transposed
Cmo17g01087 Cmo-Chr17:8978176 Cmo02g00237 Cmo-Chr2:1117825 1.84E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g243 Blo05g00317 . Bda04g00601 . . Bpe06g00510 . . . Cmo17g01087 . . . . . . . . . . . . . . Cla09g00572 Cam09g0608 Cec09g0592 Cco09g0586 Clacu09g0607 . Cre09g0581 Cone17ag0499 Cone20ag0927 . . Lsi02g02373 . . Cme01g02349 . . . . . . . . . . . . Cma17g01111 . . . Cpe12g00955 . . . . . . . . . . . . . . . . Chy01g01662 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo06g00683 CST 10 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 58.0 4.7e-48 188.7
Cmo16g01003 . 38 143 CCAAT-HAP3 Transcription Factor Family AT5G47670 82.1 2.4e-47 186.4
Cmo06g00682 . 51 157 CCAAT-HAP3 Transcription Factor Family AT5G47670 75.7 1.2e-43 174.1
Cmo20g00682 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.6 5.8e-38 155.2
Cmo02g00237 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.3e-37 154.1
Cmo06g00683 CST 59 197 CCAAT-HAP3 Transcription Factor Family AT1G21970 66.0 2.0e-49 193.4
Cmo16g01003 . 26 185 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.8 9.7e-49 191.0
Cmo06g00682 . 38 179 CCAAT-HAP3 Transcription Factor Family AT1G21970 62.0 2.6e-46 183.0
Cmo20g00682 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.3 5.6e-56 214.5
Cmo02g00237 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.4 9.5e-56 213.8
Cmo06g00687 . 1 150 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.4 3.2e-51 198.7
Cmo16g01006 CST 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 77.7 6.2e-47 184.5
Cmo16g00726 . 24 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 8.0e-47 184.1
Cmo04g00847 . 32 138 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.3 4.4e-45 178.3
Cmo04g00271 . 14 132 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.7 1.4e-43 173.3
Cmo06g00346 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.9e-43 172.9
Cmo14g00178 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.9e-43 172.9
Cmo04g01312 . 409 530 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 4.1e-43 171.8
Cmo17g01087 . 47 142 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.0 8.9e-38 154.1
Cmo04g00271 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 82.9 2.5e-50 195.7
Cmo06g00346 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.1e-48 188.3
Cmo14g00178 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.1e-48 188.3
Cmo04g01312 . 399 515 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.8 9.0e-48 187.2
Cmo06g00687 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.0 1.1e-42 170.2
Cmo02g00237 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.5e-42 169.1
Cmo20g00682 . 20 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 80.9 4.3e-42 168.3
Cmo04g00847 . 16 125 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.7 1.7e-41 166.4
Cmo16g00726 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.1 8.2e-41 164.1
Cmo16g01006 CST 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.4 4.1e-40 161.8
Cmo17g01087 . 35 138 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 7.7e-39 157.5
Cmo17g01087 . 46 142 CCAAT-HAP3 Transcription Factor Family AT2G47810 85.6 1.4e-43 173.3
Cmo06g00687 . 19 126 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.3 1.1e-40 163.7
Cmo02g00237 . 18 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.3 2.1e-39 159.5
Cmo20g00682 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 4.7e-39 158.3
Cmo16g00726 . 27 135 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.2e-38 154.8
Cmo16g01006 CST 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 6.8e-38 154.5
Cmo04g00847 . 35 130 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.9 4.4e-37 151.8
Cmo14g00178 . 1 171 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.4 4.7e-61 231.5
Cmo06g00346 . 1 158 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.7 2.7e-56 215.7
Cmo04g01312 . 399 564 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.4 2.3e-55 212.6
Cmo04g00271 . 7 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.4 1.6e-53 206.5
Cmo02g00237 . 6 125 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.2 1.1e-44 177.2
Cmo20g00682 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 75.7 4.0e-44 175.3
Cmo06g00687 . 9 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.6 4.2e-41 165.2
Cmo16g00726 . 26 131 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 5.4e-41 164.9
Cmo16g01006 CST 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 1.6e-40 163.3
Cmo04g00847 . 34 127 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.7 1.5e-38 156.8
Cmo17g01087 . 46 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 1.4e-36 150.2
Cmo16g00726 . 14 128 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.2e-44 176.4
Cmo20g00682 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 5.0e-44 175.3
Cmo02g00237 . 22 117 CCAAT-HAP3 Transcription Factor Family AT2G13570 85.4 1.5e-43 173.7
Cmo04g00847 . 22 136 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.1 9.4e-43 171.0
Cmo06g00687 . 8 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.8 1.0e-41 167.5
Cmo14g00178 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.8e-41 166.8
Cmo06g00346 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 2.3e-41 166.4
Cmo16g01006 CST 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 78.1 9.7e-40 161.0
Cmo04g01312 . 425 519 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 3.7e-39 159.1
Cmo04g00271 . 27 121 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 3.7e-39 159.1
Cmo17g01087 . 47 147 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.8e-38 156.8
Cmo20g00682 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.6 1.7e-51 199.9
Cmo02g00237 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.2 4.9e-51 198.4
Cmo06g00687 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 2.7e-49 192.6
Cmo16g01006 CST 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.8 1.3e-48 190.3
Cmo16g00726 . 22 127 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 1.2e-44 177.2
Cmo04g01312 . 425 535 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.4e-43 171.4
Cmo04g00271 . 27 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 6.4e-43 171.4
Cmo04g00847 . 30 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.3 6.4e-43 171.4
Cmo14g00178 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 7.0e-42 167.9
Cmo06g00346 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 9.2e-42 167.5
Cmo17g01087 . 47 143 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.4 4.3e-39 158.7
Cmo14g00178 . 12 171 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 2.0e-59 226.1
Cmo06g00346 . 12 157 CCAAT-HAP3 Transcription Factor Family AT3G53340 77.8 3.2e-57 218.8
Cmo04g00271 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.0e-54 209.5
Cmo04g01312 . 410 563 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.2 3.3e-54 208.8
Cmo02g00237 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.7e-45 178.7
Cmo20g00682 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.2e-45 177.6
Cmo06g00687 . 9 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.2 2.2e-42 169.5
Cmo16g00726 . 15 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 9.4e-41 164.1
Cmo16g01006 CST 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.6 6.1e-40 161.4
Cmo04g00847 . 23 127 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.3 3.0e-39 159.1
Cmo17g01087 . 46 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 2.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005137 2 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 2 2 2 5 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11429 PF00808 CBFD_NFYB_HMF 6.60E-27 CL0012 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01087 Cmo_Chr17 FPKM 0.0 0.165248 0.0 0.0 0.171855 0.144497 0.330522 0.540971 0.517098 0.0