Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01105 ATGGATTCATTTTTGGGAAACACCGTGATGAAGTTGGCTTTGAAATCAGACCCTGAAGAGCATCGCGTTGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTCCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCTATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAGCTTTTCTTCATTTATGTTCTTCCACCCATAATTTTTAATGCTGGATTTCAGGTGAAAAAGAAACAGTTCTTTCGGAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGCGATCTCATTTTTCATCATATCACTTGGTTCACTACATATATTCAAGAAATTGGATATTGGCTTCTTAGATGTGGGTGATTATTTTGCCCTAGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTGCTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAATGCCATTCAGCTTCTTGGAAACTTTTCCTACTTATTTTTTATGAGCACCTTGCTGGGAGTGATAGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCGACTGATCGGGAGGTCGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCCCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACGCTCTCATTTGTTTCAGAGATTTTCATCTTCTTATACGTTGGCATGGATGCCTTGGATATTGAGAAGTGGAAAATTGTTGGCCGAAGGCCTTGGACATCGGCTGGTGTGAGTCTAATACTGCTTGGTTTAGTCCTTGCTGCAAGGGCAGCTTTTGTATTTCCGCTCTCGTTTATATCGAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGTACACACAGCTGCAAGAGAATGCGATTATGATTACTAGCACGATCACAATTGTTCTCGTCACTAATGTGGTATTTGGACTCTTAACTAAACCCATTGTAAGATACATGCTTTCACTGCATGATACACCAATAGATGCCACAATTGTAGCAGCAGCAGATTCTCCAGTTAAGTCGCTGACCGACGTTCTTTTGTCTGGTGGTGAAGATGTCGAAGCCGATGTTCGAGAATCGAACATTCCCCGTCCTACCAGCTTACGTATGCTGTTAACAACTCCAACTCATTCCGTCCATTACTATTGGCGGATGTTCGATGATCGATACATGCGTCCTGTCTTTGGTGGAAGAGGCTTCGTACCTTTCATCCCTGGCTCACCAACTGAAAATGATTTTCTTTTAGAATTTACCAGACTGGGCTTTTGGCTTCATGGATTCAAGTCCATTCGCGTTTCTGTCGCAATTGGGGCTGAAACCAGACCCGTAAGCGGCGCACTTCACATTCTTTGCGGTGCTACTCCTTGTTTGTTATCTAATTGTTCGCCTTTTTTTGAAAAGAAACGTTGGCCGAATGAGTCAGTTACTTCCCTAGCCATGTTTCAGGTGAAGAAGAAACAGCTCTTCGAAACTTTCTGGCAATCATATTGTTTGGTGCTTTTGGAAGAGTGA 1881 42.11 MDSFLGNTVMKLALKSDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTAISFFIISLGSLHIFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNAIQLLGNFSYLFFMSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKIVGRRPWTSAGVSLILLGLVLAARAAFVFPLSFISNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGYTQLQENAIMITSTITIVLVTNVVFGLLTKPIVRYMLSLHDTPIDATIVAAADSPVKSLTDVLLSGGEDVEADVRESNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTENDFLLEFTRLGFWLHGFKSIRVSVAIGAETRPVSGALHILCGATPCLLSNCSPFFEKKRWPNESVTSLAMFQVKKKQLFETFWQSYCLVLLEE 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9077906 9086008 + CmoCh17G011050.1 Cmo17g01105 401488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01105 626 PANTHER SODIUM/HYDROGEN EXCHANGER 9 534 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cmo17g01105 626 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo17g01105 626 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo17g01105 626 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo17g01105 626 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo17g01105 626 Pfam Sodium/hydrogen exchanger family 26 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo17g01105 626 ProSiteProfiles cAMP/cGMP binding motif profile. 121 153 IPR000595 -
Cmo17g01105 626 PANTHER SODIUM/HYDROGEN EXCHANGER 9 534 - -
Cmo17g01105 626 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 22 448 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cmo17g01105 626 Gene3D - 143 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01307 Cmo-Chr11:8965531 Cmo17g01105 Cmo-Chr17:9077906 0 dispersed
Cmo13g00341 Cmo-Chr13:4368154 Cmo17g01105 Cmo-Chr17:9077906 4.30E-25 dispersed
Cmo13g00342 Cmo-Chr13:4375945 Cmo17g01105 Cmo-Chr17:9077906 3.16E-23 dispersed
Cmo17g01105 Cmo-Chr17:9077906 Cmo18g00611 Cmo-Chr18:7418948 1.78E-18 dispersed
Cmo01g01147 Cmo-Chr1:9406608 Cmo17g01105 Cmo-Chr17:9077906 0 transposed
Cmo10g01169 Cmo-Chr10:10438999 Cmo17g01105 Cmo-Chr17:9077906 0 transposed
Cmo17g01105 Cmo-Chr17:9077906 Cmo08g01176 Cmo-Chr8:7482903 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01105 - K14724 csv:101206431 943.34