Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01105 | ATGGATTCATTTTTGGGAAACACCGTGATGAAGTTGGCTTTGAAATCAGACCCTGAAGAGCATCGCGTTGCATTGTTTGTATTACTTCTCTGTGCTTGTATTGTAATTGGGCATCTCCTTGAGAAAAGTCGTTGGATAAATGAATCAGTCACTGCTATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTATTAACAACCAAAGGCAGAAACTCACGTATCCTAGTGTTTAGTGAAGAGCTTTTCTTCATTTATGTTCTTCCACCCATAATTTTTAATGCTGGATTTCAGGTGAAAAAGAAACAGTTCTTTCGGAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGCGATCTCATTTTTCATCATATCACTTGGTTCACTACATATATTCAAGAAATTGGATATTGGCTTCTTAGATGTGGGTGATTATTTTGCCCTAGGAGCAATCTTATCAGCCACAGATAGTGTTTGCACTTTGCAGGTGCTTAATCAGGACGAGACTCCTTTACTGTATAGTCTAGTCTTTGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTGCTTTTCAAAGCAATCCAGAGATTCGACCTCTCTCACATCACCTCATCCAATGCCATTCAGCTTCTTGGAAACTTTTCCTACTTATTTTTTATGAGCACCTTGCTGGGAGTGATAGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCGACTGATCGGGAGGTCGCTTTGATGATTTTAATGCCTTACCTTTCGTATATGACTGCTGAATTGTGCAATCTTAGTGGTATTCTTACCATGTTCTTTTGTGGGATTGTCATGTCCCATTACACTTGGCATAATGTGACTGAAAGTTCAAGAGTGACCACCAAGCATACTTTTGCAACGCTCTCATTTGTTTCAGAGATTTTCATCTTCTTATACGTTGGCATGGATGCCTTGGATATTGAGAAGTGGAAAATTGTTGGCCGAAGGCCTTGGACATCGGCTGGTGTGAGTCTAATACTGCTTGGTTTAGTCCTTGCTGCAAGGGCAGCTTTTGTATTTCCGCTCTCGTTTATATCGAACTTGACTAGAAAGTCTCAGAGTGACAAAATTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTGTCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGTACACACAGCTGCAAGAGAATGCGATTATGATTACTAGCACGATCACAATTGTTCTCGTCACTAATGTGGTATTTGGACTCTTAACTAAACCCATTGTAAGATACATGCTTTCACTGCATGATACACCAATAGATGCCACAATTGTAGCAGCAGCAGATTCTCCAGTTAAGTCGCTGACCGACGTTCTTTTGTCTGGTGGTGAAGATGTCGAAGCCGATGTTCGAGAATCGAACATTCCCCGTCCTACCAGCTTACGTATGCTGTTAACAACTCCAACTCATTCCGTCCATTACTATTGGCGGATGTTCGATGATCGATACATGCGTCCTGTCTTTGGTGGAAGAGGCTTCGTACCTTTCATCCCTGGCTCACCAACTGAAAATGATTTTCTTTTAGAATTTACCAGACTGGGCTTTTGGCTTCATGGATTCAAGTCCATTCGCGTTTCTGTCGCAATTGGGGCTGAAACCAGACCCGTAAGCGGCGCACTTCACATTCTTTGCGGTGCTACTCCTTGTTTGTTATCTAATTGTTCGCCTTTTTTTGAAAAGAAACGTTGGCCGAATGAGTCAGTTACTTCCCTAGCCATGTTTCAGGTGAAGAAGAAACAGCTCTTCGAAACTTTCTGGCAATCATATTGTTTGGTGCTTTTGGAAGAGTGA | 1881 | 42.11 | MDSFLGNTVMKLALKSDPEEHRVALFVLLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILLTTKGRNSRILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTAISFFIISLGSLHIFKKLDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQRFDLSHITSSNAIQLLGNFSYLFFMSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMTAELCNLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKIVGRRPWTSAGVSLILLGLVLAARAAFVFPLSFISNLTRKSQSDKIGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGYTQLQENAIMITSTITIVLVTNVVFGLLTKPIVRYMLSLHDTPIDATIVAAADSPVKSLTDVLLSGGEDVEADVRESNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTENDFLLEFTRLGFWLHGFKSIRVSVAIGAETRPVSGALHILCGATPCLLSNCSPFFEKKRWPNESVTSLAMFQVKKKQLFETFWQSYCLVLLEE | 626 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9077906 | 9086008 | + | CmoCh17G011050.1 | Cmo17g01105 | 401488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01105 | 626 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 9 | 534 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 | |
Cmo17g01105 | 626 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | Pfam | Sodium/hydrogen exchanger family | 26 | 440 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 121 | 153 | IPR000595 | - | |
Cmo17g01105 | 626 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 9 | 534 | - | - | |
Cmo17g01105 | 626 | TIGRFAM | b_cpa1: sodium/hydrogen exchanger 3 | 22 | 448 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Cmo17g01105 | 626 | Gene3D | - | 143 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo11g01307 | Cmo-Chr11:8965531 | Cmo17g01105 | Cmo-Chr17:9077906 | 0 | dispersed | |
Cmo13g00341 | Cmo-Chr13:4368154 | Cmo17g01105 | Cmo-Chr17:9077906 | 4.30E-25 | dispersed | |
Cmo13g00342 | Cmo-Chr13:4375945 | Cmo17g01105 | Cmo-Chr17:9077906 | 3.16E-23 | dispersed | |
Cmo17g01105 | Cmo-Chr17:9077906 | Cmo18g00611 | Cmo-Chr18:7418948 | 1.78E-18 | dispersed | |
Cmo01g01147 | Cmo-Chr1:9406608 | Cmo17g01105 | Cmo-Chr17:9077906 | 0 | transposed | |
Cmo10g01169 | Cmo-Chr10:10438999 | Cmo17g01105 | Cmo-Chr17:9077906 | 0 | transposed | |
Cmo17g01105 | Cmo-Chr17:9077906 | Cmo08g01176 | Cmo-Chr8:7482903 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01105 | - | K14724 | csv:101206431 | 943.34 |