Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01175 | ATGGATTTAACAAATGGGGGCAGGGCCGGCAAAGCTCCGATAGCGAATAATTCCGTTACCGAAGTAGCTGATATTGTTTCTGGTAAGTCTAGCAATCCCCAAGAGAATGATTTGGGATCAAAGTTGGGGATAGGAAGCAAAAGCAACAAGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGCTGGGATATTCAGCTGGATAGACACTTGAGCAGGGCATGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAGATTAACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGCACTTATGGTACTATTTACAGAGGAAACTATGATGGCAAAGATGCTGCAGTCGAGTTTTCGTTTGTTTTATCGCTTTATGACGATATTCTGAATATTGTAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCCGTTGCTGAAATTGCTGCTCTTAGAGCATCTTTTCGCCAGGAAGTTGCTGTATGGCATAGGCTTGACCATCCCAATGTTGCCAAGGTCAAGTATCTTTTACATGTAGTGTATGGTATTACAGTATCTCAAACAGGTCAAACCATTCATTTTTACTGTGATTATTCTAATACGGAAGGCTTTGATTCTTTACATTTGTTTTATGGAGCTTCAATGGGGACCTCCAACCTTAAAATCCCTCCCAAAAGCCCATCATTTGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGAGGAACCCTAAAGGGCTTTTTAATCAAAAACAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACGGAGAACGTGCTGTTCGATGCTCAGAAGACTCTCAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAATCCACGGGATATGACTGGAGAAACTGGCACGCTCGGTTACATGGCTCCCGAGGTCCTTGATGGTAAGCCTTATAATCGAAAATGTGATGTTTACAGTTTTGGTATATGTTTGTGGGAAACATATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAATTTCATCTGCAGTTGTACGCCAGAATTTACGACCCGAAATCCCTAGATGCTGTCCGAGTTCATTCGCAAGCATCATGAAAAGATGTTGGGATGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAACTTGTTGGAAGCCATCGATACGAGCAAGGGAGGTGGCATGATTTCTAAAGATCAAGCTACTCGTTGTTTTTGTTTCGGCATACCTCGTGGTCCATAG | 1374 | 42.43 | MDLTNGGRAGKAPIANNSVTEVADIVSGKSSNPQENDLGSKLGIGSKSNKDMVFRADKIDFKSWDIQLDRHLSRAWSRDREVPAKKEEWEINLSKLDIRYVKAHGTYGTIYRGNYDGKDAAVEFSFVLSLYDDILNIVVKVLDWGEDGVSSVAEIAALRASFRQEVAVWHRLDHPNVAKVKYLLHVVYGITVSQTGQTIHFYCDYSNTEGFDSLHLFYGASMGTSNLKIPPKSPSFDSNQSFPSRACCVVVEYLPGGTLKGFLIKNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLFDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEISSAVVRQNLRPEIPRCCPSSFASIMKRCWDANPERRPDMDEVVNLLEAIDTSKGGGMISKDQATRCFCFGIPRGP | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9450541 | 9454701 | - | CmoCh17G011750.1 | Cmo17g01175 | 401558 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01175 | 457 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 295 | 307 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | PANTHER | KINASE ATMRK1, PUTATIVE-RELATED | 131 | 180 | - | - | |
Cmo17g01175 | 457 | PANTHER | KINASE ATMRK1, PUTATIVE-RELATED | 27 | 123 | - | - | |
Cmo17g01175 | 457 | Pfam | Protein tyrosine and serine/threonine kinase | 245 | 428 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | SMART | serkin_6 | 96 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g01175 | 457 | ProSiteProfiles | Protein kinase domain profile. | 96 | 431 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g01175 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 131 | 180 | - | - | |
Cmo17g01175 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 27 | 123 | - | - | |
Cmo17g01175 | 457 | PANTHER | KINASE ATMRK1, PUTATIVE-RELATED | 216 | 450 | - | - | |
Cmo17g01175 | 457 | Gene3D | Phosphorylase Kinase; domain 1 | 84 | 185 | - | - | |
Cmo17g01175 | 457 | Gene3D | Transferase(Phosphotransferase) domain 1 | 237 | 435 | - | - | |
Cmo17g01175 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 216 | 450 | - | - | |
Cmo17g01175 | 457 | PRINTS | Tyrosine kinase catalytic domain signature | 399 | 421 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | PRINTS | Tyrosine kinase catalytic domain signature | 289 | 307 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | PRINTS | Tyrosine kinase catalytic domain signature | 251 | 264 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | PRINTS | Tyrosine kinase catalytic domain signature | 355 | 377 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g01175 | 457 | CDD | STKc_MAP3K-like | 103 | 428 | - | - | |
Cmo17g01175 | 457 | SUPERFAMILY | Protein kinase-like (PK-like) | 78 | 428 | IPR011009 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00324 | Cmo17g01175 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo10g00138 | Cmo-Chr10:636719 | Cmo17g01175 | Cmo-Chr17:9450541 | 1.73E-161 | dispersed | |
Cmo11g00102 | Cmo-Chr11:544268 | Cmo17g01175 | Cmo-Chr17:9450541 | 1.03E-56 | dispersed | |
Cmo11g01694 | Cmo-Chr11:11996809 | Cmo17g01175 | Cmo-Chr17:9450541 | 5.69E-176 | dispersed | |
Cmo14g01771 | Cmo-Chr14:13694547 | Cmo17g01175 | Cmo-Chr17:9450541 | 3.16E-115 | dispersed | |
Cmo17g01175 | Cmo-Chr17:9450541 | Cmo03g00591 | Cmo-Chr3:5670918 | 1.07E-58 | dispersed | |
Cmo14g01770 | Cmo-Chr14:13686586 | Cmo17g01175 | Cmo-Chr17:9450541 | 9.57E-138 | wgd | |
Cmo17g01175 | Cmo-Chr17:9450541 | Cmo06g01395 | Cmo-Chr6:10228553 | 0 | wgd | |
Cmo17g01175 | Cmo-Chr17:9450541 | Cmo08g00324 | Cmo-Chr8:2028972 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75021 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-50 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01175 | - | - | csv:101207522 | 714.146 |