Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01175 ATGGATTTAACAAATGGGGGCAGGGCCGGCAAAGCTCCGATAGCGAATAATTCCGTTACCGAAGTAGCTGATATTGTTTCTGGTAAGTCTAGCAATCCCCAAGAGAATGATTTGGGATCAAAGTTGGGGATAGGAAGCAAAAGCAACAAGGATATGGTATTTCGTGCTGATAAGATTGATTTCAAGAGCTGGGATATTCAGCTGGATAGACACTTGAGCAGGGCATGGTCAAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAGATTAACTTGTCTAAACTTGATATCAGATATGTTAAAGCTCATGGCACTTATGGTACTATTTACAGAGGAAACTATGATGGCAAAGATGCTGCAGTCGAGTTTTCGTTTGTTTTATCGCTTTATGACGATATTCTGAATATTGTAGTGAAAGTGCTTGATTGGGGGGAGGATGGTGTTTCCTCCGTTGCTGAAATTGCTGCTCTTAGAGCATCTTTTCGCCAGGAAGTTGCTGTATGGCATAGGCTTGACCATCCCAATGTTGCCAAGGTCAAGTATCTTTTACATGTAGTGTATGGTATTACAGTATCTCAAACAGGTCAAACCATTCATTTTTACTGTGATTATTCTAATACGGAAGGCTTTGATTCTTTACATTTGTTTTATGGAGCTTCAATGGGGACCTCCAACCTTAAAATCCCTCCCAAAAGCCCATCATTTGACAGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGAGGAACCCTAAAGGGCTTTTTAATCAAAAACAGGAAAAAGAAACTTGCATTTAAGGTTGTGATTCAACTTGCTTTGGATCTTTCTAGAGGTTTGAGTTATCTACACTCCAAAAAGATTGTACACCGTGATATTAAAACGGAGAACGTGCTGTTCGATGCTCAGAAGACTCTCAAAATTGTTGATTTTGGCGTTGCTCGAGTCGAAGCGCAGAATCCACGGGATATGACTGGAGAAACTGGCACGCTCGGTTACATGGCTCCCGAGGTCCTTGATGGTAAGCCTTATAATCGAAAATGTGATGTTTACAGTTTTGGTATATGTTTGTGGGAAACATATTGCTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAATTTCATCTGCAGTTGTACGCCAGAATTTACGACCCGAAATCCCTAGATGCTGTCCGAGTTCATTCGCAAGCATCATGAAAAGATGTTGGGATGCAAATCCAGAAAGGCGACCCGACATGGACGAGGTCGTAAACTTGTTGGAAGCCATCGATACGAGCAAGGGAGGTGGCATGATTTCTAAAGATCAAGCTACTCGTTGTTTTTGTTTCGGCATACCTCGTGGTCCATAG 1374 42.43 MDLTNGGRAGKAPIANNSVTEVADIVSGKSSNPQENDLGSKLGIGSKSNKDMVFRADKIDFKSWDIQLDRHLSRAWSRDREVPAKKEEWEINLSKLDIRYVKAHGTYGTIYRGNYDGKDAAVEFSFVLSLYDDILNIVVKVLDWGEDGVSSVAEIAALRASFRQEVAVWHRLDHPNVAKVKYLLHVVYGITVSQTGQTIHFYCDYSNTEGFDSLHLFYGASMGTSNLKIPPKSPSFDSNQSFPSRACCVVVEYLPGGTLKGFLIKNRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDIKTENVLFDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEISSAVVRQNLRPEIPRCCPSSFASIMKRCWDANPERRPDMDEVVNLLEAIDTSKGGGMISKDQATRCFCFGIPRGP 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9450541 9454701 - CmoCh17G011750.1 Cmo17g01175 401558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01175 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Cmo17g01175 457 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 131 180 - -
Cmo17g01175 457 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 27 123 - -
Cmo17g01175 457 Pfam Protein tyrosine and serine/threonine kinase 245 428 IPR001245 GO:0004672|GO:0006468
Cmo17g01175 457 SMART serkin_6 96 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01175 457 ProSiteProfiles Protein kinase domain profile. 96 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01175 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 131 180 - -
Cmo17g01175 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 27 123 - -
Cmo17g01175 457 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 216 450 - -
Cmo17g01175 457 Gene3D Phosphorylase Kinase; domain 1 84 185 - -
Cmo17g01175 457 Gene3D Transferase(Phosphotransferase) domain 1 237 435 - -
Cmo17g01175 457 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 216 450 - -
Cmo17g01175 457 PRINTS Tyrosine kinase catalytic domain signature 399 421 IPR001245 GO:0004672|GO:0006468
Cmo17g01175 457 PRINTS Tyrosine kinase catalytic domain signature 289 307 IPR001245 GO:0004672|GO:0006468
Cmo17g01175 457 PRINTS Tyrosine kinase catalytic domain signature 251 264 IPR001245 GO:0004672|GO:0006468
Cmo17g01175 457 PRINTS Tyrosine kinase catalytic domain signature 355 377 IPR001245 GO:0004672|GO:0006468
Cmo17g01175 457 CDD STKc_MAP3K-like 103 428 - -
Cmo17g01175 457 SUPERFAMILY Protein kinase-like (PK-like) 78 428 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00324 Cmo17g01175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00138 Cmo-Chr10:636719 Cmo17g01175 Cmo-Chr17:9450541 1.73E-161 dispersed
Cmo11g00102 Cmo-Chr11:544268 Cmo17g01175 Cmo-Chr17:9450541 1.03E-56 dispersed
Cmo11g01694 Cmo-Chr11:11996809 Cmo17g01175 Cmo-Chr17:9450541 5.69E-176 dispersed
Cmo14g01771 Cmo-Chr14:13694547 Cmo17g01175 Cmo-Chr17:9450541 3.16E-115 dispersed
Cmo17g01175 Cmo-Chr17:9450541 Cmo03g00591 Cmo-Chr3:5670918 1.07E-58 dispersed
Cmo14g01770 Cmo-Chr14:13686586 Cmo17g01175 Cmo-Chr17:9450541 9.57E-138 wgd
Cmo17g01175 Cmo-Chr17:9450541 Cmo06g01395 Cmo-Chr6:10228553 0 wgd
Cmo17g01175 Cmo-Chr17:9450541 Cmo08g00324 Cmo-Chr8:2028972 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75021 PF07714 PK_Tyr_Ser-Thr 3.30E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01175 - - csv:101207522 714.146